Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 67.8 bits (164), Expect = 6e-16
 Identities = 56/254 (22%), Positives = 117/254 (46%), Gaps = 43/254 (16%)

Query: 181 VGQIAKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFS---TWQRFHPNQAISGINLE 237
           +G+   +G+  + VIGV+ +        S ++YS     +    ++R+          L 
Sbjct: 178 LGKSVYMGSQHYVVIGVVERLQTAWVDNSNVEYSSVLSVNYPADYKRY----------LV 227

Query: 238 PRVGSDRQALAATVQQVLKRKYAA-------SLQDQQIVMVQDHFLSQKSMQQFLLRLQS 290
               SD   L   + +VL ++Y +       ++ +++I   +DH L           + +
Sbjct: 228 RAKASDIARLKEVIPEVLHKEYPSRVIEGFTTISERRIEAYRDHEL-----------MAT 276

Query: 291 FLGIIGFITLAVASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMG 350
            L ++  + L + SLG+T ++   ++R T+ IG R A+GA    I  ++L ++ +   +G
Sbjct: 277 VLTMMVVLLLLITSLGVTGMVMFNIQRRTKQIGTRRALGAKKRDIISYFLVENYLLCLLG 336

Query: 351 GIAGLGVTFAMVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPA 410
           G  G+ +   + + L ++              +P L+LS  +  +V + V+  +A +LPA
Sbjct: 337 GTLGVLLAIQLGQQLMSL------------YSLPMLALSYPLFTVVGLFVVTTLAVYLPA 384

Query: 411 NHAAKVTPLQALQS 424
             AAK++P  A ++
Sbjct: 385 RKAAKISPATATRT 398