Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., ABC transporter, ATP-binding/permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (249), Expect = 1e-25
 Identities = 97/424 (22%), Positives = 175/424 (41%), Gaps = 31/424 (7%)

Query: 4   IRQIMQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGG 63
           ++  +  M+  +LR  LT+L +      +  ++A+GEG +  I+++I +   N I +  G
Sbjct: 262 LKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTIDIRPG 321

Query: 64  YATQTHGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKS 123
                 G     +  +LT  D+  L  LP V    PS      +   +K        V  
Sbjct: 322 LG---FGDRRSARVRTLTASDANALKNLPYVDSVTPSISSSVTVRLGNKAVTASVNGVGP 378

Query: 124 EYQAMNKLRLLPGGRWFNP-VDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVG 182
           E+  +    L  G  W +  VD   Q  V+        QLF    G   S        +G
Sbjct: 379 EFFRVRGYELAQGQFWDDDSVDALAQDAVI--DDNTRKQLFPDSTGAMGS-------VIG 429

Query: 183 QIAKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQ-RFHPNQAISGINLEPRVG 241
           Q+  +G     +IGV             ++   + P++T   R    + + GI +     
Sbjct: 430 QVIFLGDLPVRIIGVTKPKESAFGNSDALNV--WVPYTTVSGRMVGKKYLDGITVRLDES 487

Query: 242 SDRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLA 301
               A    +  +LK ++      Q    +    + Q ++++    +   +  I  I+L 
Sbjct: 488 VPSNAAEQGIITLLKMRHGT----QDFFTINTDTIRQ-NIEKTTATMTLLISAIAVISLV 542

Query: 302 VASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAGLGVTFAM 361
           V  +G+ N+M  +V   TR+IGVRMAVGA  + I   +L ++++    GG  G+ + + +
Sbjct: 543 VGGIGVMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLI 602

Query: 362 VRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQA 421
             + A        IY          S + IV      T++G++  +LPA +AA++ P++A
Sbjct: 603 GVVFAQAGGSFQMIY----------STTSIVAAFACSTLIGVLFGFLPARNAARLDPVEA 652

Query: 422 LQSE 425
           L  E
Sbjct: 653 LARE 656