Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., ABC transporter related (RefSeq) from Shewanella sp. ANA-3

 Score = 99.4 bits (246), Expect = 3e-25
 Identities = 93/423 (21%), Positives = 173/423 (40%), Gaps = 29/423 (6%)

Query: 4   IRQIMQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGG 63
           ++  +  M+  +LR  LT+L +      +  ++A+GEG +  I+++I +   N I +  G
Sbjct: 262 LKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTIDIRPG 321

Query: 64  YATQTHGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKS 123
                 G     +  +LT  D+  L  LP V    PS      + + +K        V  
Sbjct: 322 SG---FGDRRSARVRTLTASDANALKNLPYVDSVTPSIGSSATVRYGNKAVTATVNGVGP 378

Query: 124 EYQAMNKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQ 183
           E+  +    L  G  W +       +  V+       QLF    G   S        +G+
Sbjct: 379 EFFRVRGYELAQGQFWDDDSVNALAQDAVI-DENTRKQLFPNSSGAMNSA-------IGE 430

Query: 184 IAKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQ-RFHPNQAISGINLEPRVGS 242
           +  +G     +IGV             ++   + P++T   R    + + GI +      
Sbjct: 431 VIFLGDLPVRIIGVTQPKESAFGNSDALNV--WVPYTTVSGRMVGKKYLDGITVRLDESV 488

Query: 243 DRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAV 302
              A    +  +LK ++      Q    +    + Q ++++    +   +  I  I+L V
Sbjct: 489 PSNAAEQGIISLLKMRHGT----QDFFTINTDTIRQ-NIEKTTATMTLLISAIAVISLVV 543

Query: 303 ASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAGLGVTFAMV 362
             +G+ N+M  +V   TR+IGVRMAVGA  + I   +L ++++    GG  G+ + + + 
Sbjct: 544 GGIGVMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLIG 603

Query: 363 RLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQAL 422
            + A        IY          S + IV      T++G++  +LPA +AA++ P+ AL
Sbjct: 604 VVFAQAGGSFQMIY----------STTSIVAAFACSTLIGVLFGFLPARNAARLDPVDAL 653

Query: 423 QSE 425
             E
Sbjct: 654 ARE 656