Pairwise Alignments

Query, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., probable ABC transporter permease protein from Synechococcus elongatus PCC 7942

 Score =  136 bits (342), Expect = 1e-36
 Identities = 114/416 (27%), Positives = 199/416 (47%), Gaps = 36/416 (8%)

Query: 5   LQQSWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVASG 64
           L  + +TL A+RL+S L +  I  G  SV+ ++ +G+G  R  +E F  L      +  G
Sbjct: 9   LSMAVKTLRANRLRSALTMLGIIIGNASVITMVGVGQGAQRLASEQFESLGPNVLFIVPG 68

Query: 65  QTSEVWQGMPARRPIQLTESLM--------REVAQRPEIQRYSIVYENREVSITQQRGTA 116
                  G+   + + L +++          EVA  P++    +V    E S TQ     
Sbjct: 69  NQDTRRGGLDIPKTLVLADAVAIATQVPTAGEVA--PQVSTRQLVTYQGESSTTQ----- 121

Query: 117 IGSMVSGVDRGYFSLAGLKLTLGSRDFSLHDQHNHRRVAILGDHVAATS---QLKIGDEF 173
               V GV   + ++    +  G R FS  D     +VA+LG  +A      Q  +G   
Sbjct: 122 ----VFGVTPSFLTVRSFSVARG-RFFSDLDLSRAEQVAVLGSDLAIKLFGVQNPVGASI 176

Query: 174 KIRGIAFRVIGIMDDESSRFSFGDNQKVFIPSSTFKD--IWDTQP-----NMMLVLPAQG 226
           +I+G +FRVIG+M+ + S      +  V++P +T     +  T P     + + V     
Sbjct: 177 RIKGASFRVIGVMEPKGSFLGNNQDDAVYLPLTTVSSRILGTTSPYGIEVSFISVAAKDA 236

Query: 227 VSSWALREQLRHTFAQRLHFSPEDQEAVFLPDFGSGVAVITAILRGIQAFLAASGMMTMA 286
            S  A + Q+ +   QR     ED   V        + ++  +  G+   L+A   +++ 
Sbjct: 237 NSIDAAQFQITNLLRQRHRIIREDDFEVRSQK--DVLTIVGTVTNGLTLMLSAIAGISLL 294

Query: 287 VGILGVANMMFLAVTERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLLLAYFG 346
           VG +G+ N+M ++V+ERT+EIG+R AIGAT + I  QF++E ++L ++G  +G  L   G
Sbjct: 295 VGGIGIMNIMLVSVSERTQEIGLRKAIGATQKDILNQFMIEAVILALLGGAIGTGLGITG 354

Query: 347 VLLLNHLGLPTWLGEPVITSTTVWLSMLVTSILALAAAYFPARRAAQLEPVIALSS 402
           V  +  L  P   G   ++   + +++ ++S + L     PAR+AA+L+P++AL S
Sbjct: 355 VTAIALL-TPLKAG---VSPVAIAITVTISSGIGLFFGVVPARQAARLDPIVALRS 406