Pairwise Alignments

Query, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., ABC-type antimicrobial peptide transport system, permease component from Dechlorosoma suillum PS

 Score =  121 bits (303), Expect = 4e-32
 Identities = 105/407 (25%), Positives = 186/407 (45%), Gaps = 18/407 (4%)

Query: 4   LLQQSWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVAS 63
           +L ++W+ + A+RL++ L +  +  GV +VV+++A+G+G   A  +S   +     +V S
Sbjct: 5   MLGEAWRAMGANRLRTFLTMLGMVIGVGAVVLMLAIGQGAQYAVAQSINSMGSNLFIVLS 64

Query: 64  GQTSEVWQGMPARRPIQLTESLMREVAQRPEIQRYSIVYENREVSITQQRGTAIGSMVSG 123
           G T+       +     LT +    + +   ++  + V++     +         S V G
Sbjct: 65  GFTNAGGVRSGSGNAPTLTVTDAEAITELDGVETAAPVHQGSAQLVYGSSNW--NSYVIG 122

Query: 124 VDRGYFSLAGLKLTLGSRDFSLHDQHNHRRVAILGDHVAAT---SQLKIGDEFKIRGIAF 180
               Y  +    L  GS  F+  D     RVA++G   A     ++   G   +I    F
Sbjct: 123 TTPAYLDVRSWALVDGS-PFTDSDLRASTRVALIGKTAAQNLFGAENPTGKTLRIGQAPF 181

Query: 181 RVIGIMDDESSRFSFGDNQKVFIPSST------FKDIWDTQPNMMLVLPAQGVSSWALRE 234
            ++G++  +       D   V I   T      F   +      ++V  A      A+  
Sbjct: 182 LILGVLAPKGQSLDGRDQDDVLIVPLTTAQRKLFGTPFQGSVRAIMVKAAAPEVMPAVEN 241

Query: 235 QLRHTFAQRLHFSPEDQEAVFLPDFGSGVAVITAILRGIQAFLAASGMMTMAVGILGVAN 294
            +     QR    P   +   + +  +         R +   L A   +++ VG +G+ N
Sbjct: 242 SMNALLRQRHRIRPGQDDDFNVRNLTAVADSAAETTRIMSLLLGAIASVSLLVGGIGIMN 301

Query: 295 MMFLAVTERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLLLAYFGVLLLNHLG 354
           +M ++VTERTREIG+R+AIGA  + I  QFLLE +++ + G L+GLLL   G +L N L 
Sbjct: 302 IMLVSVTERTREIGIRMAIGAREKDILTQFLLEAIVISIAGCLIGLLLGIGGAVLTNLL- 360

Query: 355 LPTWLGEPVITS-TTVWLSMLVTSILALAAAYFPARRAAQLEPVIAL 400
                G  VI S ++V ++  V + + +   Y+PAR+AA+L+P+ AL
Sbjct: 361 ----TGTAVIISGSSVIVAFSVAAGVGIFFGYYPARKAARLDPIEAL 403