Pairwise Alignments

Query, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., ABC transporter, ATP-binding/permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  111 bits (277), Expect = 7e-29
 Identities = 104/409 (25%), Positives = 190/409 (46%), Gaps = 28/409 (6%)

Query: 5   LQQSWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVASG 64
           L+ +   +  HRL++ L +  I  G+ SVV ++ALGEG  R   +S   +   T  +  G
Sbjct: 262 LKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTIDIRPG 321

Query: 65  QTSEVWQGMPARRPIQLTESLMREVAQRPEIQRYSIVYENREVSITQQRGT-AIGSMVSG 123
                  G   RR  ++      +      +     V  +   S+T + G  A+ + V+G
Sbjct: 322 ------LGFGDRRSARVRTLTASDANALKNLPYVDSVTPSISSSVTVRLGNKAVTASVNG 375

Query: 124 VDRGYFSLAGLKLTLG------SRDFSLHDQ--HNHRRVAILGDHVAATSQLKIGDEFKI 175
           V   +F + G +L  G      S D    D    ++ R  +  D   A   + IG    +
Sbjct: 376 VGPEFFRVRGYELAQGQFWDDDSVDALAQDAVIDDNTRKQLFPDSTGAMGSV-IGQVIFL 434

Query: 176 RGIAFRVIGIMDDESSRFSFGDNQKVFIPSSTF--KDIWDTQPNMMLVLPAQGVSSWALR 233
             +  R+IG+   + S F   D   V++P +T   + +     + + V   + V S A  
Sbjct: 435 GDLPVRIIGVTKPKESAFGNSDALNVWVPYTTVSGRMVGKKYLDGITVRLDESVPSNAAE 494

Query: 234 EQLRHTFAQRLHFSPEDQEAVFLPDFGSGVAVITAILRGIQAFLAASGMMTMAVGILGVA 293
           + +      ++    +D   +        +   TA +      ++A  ++++ VG +GV 
Sbjct: 495 QGI--ITLLKMRHGTQDFFTINTDTIRQNIEKTTATM---TLLISAIAVISLVVGGIGVM 549

Query: 294 NMMFLAVTERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLLLAY-FGVLLLNH 352
           N+M ++VTERTREIGVR+A+GA    I +QFL+E +L+ + G  +G+ LAY  GV+    
Sbjct: 550 NIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLIGVVFAQA 609

Query: 353 LGLPTWLGEPVITSTTVWLSMLVTSILALAAAYFPARRAAQLEPVIALS 401
            G      + + ++T++  +   ++++ +   + PAR AA+L+PV AL+
Sbjct: 610 GG----SFQMIYSTTSIVAAFACSTLIGVLFGFLPARNAARLDPVEALA 654