Pairwise Alignments

Query, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., ABC transporter related (RefSeq) from Shewanella sp. ANA-3

 Score =  108 bits (270), Expect = 5e-28
 Identities = 102/411 (24%), Positives = 192/411 (46%), Gaps = 32/411 (7%)

Query: 5   LQQSWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVASG 64
           L+ +   +  HRL++ L +  I  G+ SVV ++ALGEG  R   +S   +   T  +  G
Sbjct: 262 LKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTIDIRPG 321

Query: 65  QTSEVWQGMPARRPIQLTESLMREVAQRPEIQRYSIVYENREVSITQQRGT-AIGSMVSG 123
                  G   RR  ++      +      +     V  +   S T + G  A+ + V+G
Sbjct: 322 ------SGFGDRRSARVRTLTASDANALKNLPYVDSVTPSIGSSATVRYGNKAVTATVNG 375

Query: 124 VDRGYFSLAGLKLTLGS--RDFSLH--------DQHNHRRVAILGDHVAATSQLKIGDEF 173
           V   +F + G +L  G    D S++        D++  ++   L  + +      IG+  
Sbjct: 376 VGPEFFRVRGYELAQGQFWDDDSVNALAQDAVIDENTRKQ---LFPNSSGAMNSAIGEVI 432

Query: 174 KIRGIAFRVIGIMDDESSRFSFGDNQKVFIPSSTF--KDIWDTQPNMMLVLPAQGVSSWA 231
            +  +  R+IG+   + S F   D   V++P +T   + +     + + V   + V S A
Sbjct: 433 FLGDLPVRIIGVTQPKESAFGNSDALNVWVPYTTVSGRMVGKKYLDGITVRLDESVPSNA 492

Query: 232 LREQLRHTFAQRLHFSPEDQEAVFLPDFGSGVAVITAILRGIQAFLAASGMMTMAVGILG 291
             + +      ++    +D   +        +   TA +      ++A  ++++ VG +G
Sbjct: 493 AEQGIISLL--KMRHGTQDFFTINTDTIRQNIEKTTATM---TLLISAIAVISLVVGGIG 547

Query: 292 VANMMFLAVTERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLLLAY-FGVLLL 350
           V N+M ++VTERTREIGVR+A+GA    I +QFL+E +L+ + G  +G+ LAY  GV+  
Sbjct: 548 VMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLIGVVFA 607

Query: 351 NHLGLPTWLGEPVITSTTVWLSMLVTSILALAAAYFPARRAAQLEPVIALS 401
              G      + + ++T++  +   ++++ +   + PAR AA+L+PV AL+
Sbjct: 608 QAGG----SFQMIYSTTSIVAAFACSTLIGVLFGFLPARNAARLDPVDALA 654