Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 96/434 (22%), Positives = 176/434 (40%), Gaps = 35/434 (8%)

Query: 3   KGFLTACV-LTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLL 61
           K  +T C+ L  L A +    + + Q  Q+A+   P    A+  V+  E  +  A   LL
Sbjct: 2   KFLITMCLALLPLGALADDTYIDLWQLHQEAQGADPRVLRAQALVRSGEGKERAAFGQLL 61

Query: 62  PSLSGSAGMNWSES-------QNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERN 114
           P L+ S  +N S         Q         + Q ++D + W +  K        +L R 
Sbjct: 62  PQLNASGSVNRSRRDDDLDRIQYNGKRMAVMLNQVIYDPQVWRSYQK------YLELARQ 115

Query: 115 QAYN------QLAHQLLSAYFALAEAQSNLTLAQQK-QADGAQLLAIAE--QRYLAGKIK 165
             Y       Q +  L   YFA+  A+  L+L + + +A    L  +     R +A    
Sbjct: 116 SGYESVDTRVQASIDLSERYFAVLAAEDELSLVRSELEATERNLKRVKALYARQMAMVTD 175

Query: 166 SVELEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAE 225
           +++LE  RV+ L  +   + A  ++   R  +S L+     +  +     P    P  A+
Sbjct: 176 TLDLEA-RVDALKADE--IEASNKVLASREAISELLGRDVSERFKRIGDNPAFILPAQAQ 232

Query: 226 LDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSL-------RASAGYQDG-DQR 277
            D W+  A D +P L      V  ++ A  ++++G+ P L       R+  GY+     R
Sbjct: 233 -DYWVQTALDSNPALHAREHSVLAAEAAIAENKAGHLPRLGLNLTAQRSDIGYEGAVTPR 291

Query: 278 NGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEW 337
           +    A L L +P+   G+TR+    +  +   AQQ+   +   + +  R     +  E 
Sbjct: 292 SDNLVASLDLQMPLYSGGSTRARVSSSESDKEAAQQELEALRRQVIKETRTAYLGMTAEL 351

Query: 338 QQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRI 397
            +I    + +   +K   + ++ F  G+  A D++D     FRA+ +     Y +    +
Sbjct: 352 SRIKATRRALESAEKSRVATEKAFGYGVKNAVDVLDSIKDEFRARRDFYQSQYKFVTSLL 411

Query: 398 ELLKLTGQLNDNAI 411
            L + +G+L D  I
Sbjct: 412 VLHRWSGRLGDGDI 425