Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., Outer membrane component of tripartite multidrug resistance system from Pseudomonas fluorescens FW300-N2E2

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 86/381 (22%), Positives = 162/381 (42%), Gaps = 26/381 (6%)

Query: 30  QQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWS--------ESQNGSSS 81
           ++A + SPD  IA   V  +    Y A +  LP+L  S G + S        + Q G+ S
Sbjct: 70  REALRDSPDMQIASARVHQASAAAYAANAARLPTLDASGGASRSRLSRDQDPQGQGGAYS 129

Query: 82  YGATI------EQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFALAEAQ 135
              T+         LW  ++ +A + A      A+++R  A   LA  +  AY  L +A 
Sbjct: 130 TLRTLGVDFNYNFDLWGGQR-AAWEAALGQARSAEIDRQAAQLTLAADVARAYSDLGQAH 188

Query: 136 SNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRS 195
               LA +      Q+L + ++R  AG     + ++    +   ++T+++A+  L++ + 
Sbjct: 189 IIYDLASEDLKRTRQMLDLGKRRLTAGIDSEYQFQQTESLEASADATLIDAEKRLQSAKI 248

Query: 196 QLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTA-AKDHSPELLIAIQKVAISQIAK 254
            L++L+     +  E+    P      +  L   L A      P+L+ A  +V  +    
Sbjct: 249 ALAVLLGKGPDRGHEI--PRPNVLQASAVALPSNLPAELLGRRPDLVAARWRVEAASKNI 306

Query: 255 QQSQSGYYPSLR--ASAGYQD--GDQRNGE----FNAGLTLSIPIDLNGATRSDNEKAHL 306
           +  ++ +YP+L   A+AG +   GD   G     FN G T+S+PI   G  R+D +    
Sbjct: 307 EAGKTNFYPNLNLSAAAGTRSLLGDAMFGSASRFFNVGPTVSLPIFDGGRLRADLDARDA 366

Query: 307 NWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLFDAGLA 366
           ++ +A  Q  K  +    ++   I Q+    +QI               +  Q + +G+ 
Sbjct: 367 DYDLAVAQYNKSLVTALGDVSDTINQLRDIARQIGAQQHATDIAQSSYDTVVQRYGSGIG 426

Query: 367 EASDLIDVHNSLFRAKHNLAS 387
              D++ +   L +A+  LA+
Sbjct: 427 NYLDVLSIEQQLLQAQRQLAN 447



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 225 ELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGY--------QDGDQ 276
           +LD  +  A   SP++ IA  +V  +  A   + +   P+L AS G         QD   
Sbjct: 64  QLDGLIREALRDSPDMQIASARVHQASAAAYAANAARLPTLDASGGASRSRLSRDQDPQG 123

Query: 277 RNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEI 320
           + G ++   TL +  + N         A   W  A  Q R  EI
Sbjct: 124 QGGAYSTLRTLGVDFNYNFDLWGGQRAA---WEAALGQARSAEI 164