Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., channel protein TolC from Pseudomonas fluorescens FW300-N2C3

 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 94/428 (21%), Positives = 174/428 (40%), Gaps = 23/428 (5%)

Query: 3   KGFLTACV-LTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLL 61
           K  +T C+ L  L   +    + + Q  Q+A+   P    A+   +  E  +  A   LL
Sbjct: 2   KRLITLCLALMPLGVLADDTYVDLWQLHQEAQGADPRVLRAQALTRSGEGKERAAFGQLL 61

Query: 62  PSLSGSAGMNWSES-------QNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERN 114
           P L+ S  +N S         Q         + Q ++D + W +  K       +  E  
Sbjct: 62  PQLNASGSVNRSRRDDDLNRIQYNGKRMAVVLNQVIYDPQVWRSYQKYIELTRQSGYEST 121

Query: 115 QAYNQLAHQLLSAYFALAEAQSNLTLAQQK-QADGAQLLAIAE--QRYLAGKIKSVELEE 171
               Q +  L   YFA+  A+  L+L + + QA    L  +     R +A    +++LE 
Sbjct: 122 DTQVQASIDLSERYFAVLAAEDELSLVRSELQATERNLKRVKALYARQMAMVTDALDLEA 181

Query: 172 LRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLT 231
            RV+ L  +   + A  ++   R  +S L+     +  +     P  S P  A+ D W+ 
Sbjct: 182 -RVDALKADE--IEASNKVLVSREAISELVGRDVSERFKRIGDNPAFSLPAQAQ-DYWVQ 237

Query: 232 AAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSL-------RASAGYQDG-DQRNGEFNA 283
            A D +P L      V  ++ A  ++++G+ P L       R+  GY+     R+    A
Sbjct: 238 TALDSNPALHAREHSVLAAEAAIAENKAGHLPRLGLNLTAQRSDIGYEGAVTPRSDNLVA 297

Query: 284 GLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMA 343
            L L +P+   G+TR+    +  +  +AQQ+   +   + +  R     +  E  +I   
Sbjct: 298 SLDLQMPLYSGGSTRARVSSSESDKEVAQQELEALRRQVIKETRTAYLGMSAELSRIKAT 357

Query: 344 DQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLT 403
            + +   +K   + ++ F  G+  A D++D     FRA+ +     Y +    + L + +
Sbjct: 358 RRALESAEKSRMATEKAFGYGVKNAVDVLDSIKEEFRARRDFYQSQYKFVTSLLVLHRWS 417

Query: 404 GQLNDNAI 411
           G+L D  I
Sbjct: 418 GRLGDGDI 425