Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., multidrug RND transporter from Pseudomonas fluorescens FW300-N2C3

 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 86/384 (22%), Positives = 163/384 (42%), Gaps = 32/384 (8%)

Query: 30  QQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWS--------ESQNG--- 78
           ++A + SPD  +A   V  +    Y A +  +P+L  S  ++ S        + Q G   
Sbjct: 75  REALRDSPDMQVASARVHQASAAAYAANAARMPTLDASGSVSRSRLARDQDPQGQGGAYS 134

Query: 79  ---SSSYGATIEQTLWDSRK--W-SALDKADADWVLAQLERNQAYNQLAHQLLSAYFALA 132
              S S        LW  ++  W +AL +A A    A+++R  A   LA  +  AY  L 
Sbjct: 135 TLRSLSVDFNYNFDLWGGQRAAWEAALGQARA----AEIDRQAAQLTLAADVARAYSDLG 190

Query: 133 EAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELET 192
           +A     LA +      Q+L + ++R  AG     + ++    +   ++T+++A+  L++
Sbjct: 191 QAHIIHDLAAEDLKRTRQMLDLGKRRLSAGIDSEYQFQQTESLEASADATLIDAEKRLQS 250

Query: 193 KRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTA-AKDHSPELLIAIQKVAISQ 251
            +  L++L+     + +E+    P      +  L   L A      P+L+ A  +V  + 
Sbjct: 251 AKIALAVLLGKGPDRGNEI--ARPNVLQASAVALPSNLPAELLGRRPDLVAARWRVEAAS 308

Query: 252 IAKQQSQSGYYPSLR--ASAGYQD--GDQRNGE----FNAGLTLSIPIDLNGATRSDNEK 303
              +  ++ +YP+L   A+AG Q   GD   G     FN   T+S+PI   G  R+D + 
Sbjct: 309 KNIEAGKTNFYPNLNLSAAAGVQSLLGDAMFGSASRFFNVAPTVSLPIFDGGRLRADLDA 368

Query: 304 AHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLFDA 363
              ++ +A  Q  K  +    ++   I Q+    +QI               +  Q + +
Sbjct: 369 RDADYDLAVAQYNKSLVTALGDVSDTINQLRDIARQIGAQQHATDIAQNSYDTVVQRYGS 428

Query: 364 GLAEASDLIDVHNSLFRAKHNLAS 387
           G+    D++ +   L +A+  LA+
Sbjct: 429 GIGNYLDVLSIEQQLLQAQRQLAN 452



 Score = 25.8 bits (55), Expect = 0.003
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 11/104 (10%)

Query: 225 ELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRAS--------AGYQDGDQ 276
           +LD  +  A   SP++ +A  +V  +  A   + +   P+L AS        A  QD   
Sbjct: 69  QLDGLIREALRDSPDMQVASARVHQASAAAYAANAARMPTLDASGSVSRSRLARDQDPQG 128

Query: 277 RNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEI 320
           + G ++   +LS+  + N         A   W  A  Q R  EI
Sbjct: 129 QGGAYSTLRSLSVDFNYNFDLWGGQRAA---WEAALGQARAAEI 169