Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., channel protein TolC from Pseudomonas fluorescens FW300-N2E3

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 85/413 (20%), Positives = 165/413 (39%), Gaps = 29/413 (7%)

Query: 29  WQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQNGSSS------- 81
           +Q+A   + D   A       ++    A++ LLP+LSGSA +    ++    S       
Sbjct: 36  YQEAVDNNADLAAARAQYGAQKEVVPQARAGLLPNLSGSAEVADVRTKIDQPSAIANRSA 95

Query: 82  --YGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFALAEAQSNLT 139
             Y AT+ Q L+ + +W  L  A      A L+ +     L  +    YF +  +Q NL 
Sbjct: 96  HFYQATLAQPLFRADRWFQLQAAKDVNEQAALQLSATEQNLILKSAETYFNVLRSQDNLA 155

Query: 140 LAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQLSI 199
             + ++A   + L  + +R+  G     ++ + + +     +  + AQ +++     L  
Sbjct: 156 STKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRILAQRQVDDAFEALIT 215

Query: 200 LINASAPQVDEVDTQTPT-PSWPFSAELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQ 258
           L N     +  +    P  P  P  A+   W+  A   +  LL +   V+ ++   +Q +
Sbjct: 216 LTNRQYNSIQGIVHTLPVLPPAPNDAKA--WVDTAAKQNLNLLASNYAVSAAEETLKQRK 273

Query: 259 SGYYPSLRASAGYQDGDQRNGEFN-----------------AGLTLSIPIDLNGATRSDN 301
           +G+ P+L A A Y+ GD     F+                  GL L+IPI   G T S  
Sbjct: 274 AGHAPTLDAVAQYKTGDNDALGFSNPSAFGQPYGGTVSQSTVGLQLNIPIYSGGLTSSQV 333

Query: 302 EKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLF 361
            +++      +QQ+  +   + +N R   + V  + +Q+    Q +      + + +  +
Sbjct: 334 RESYSRLDQNEQQREALRRQVVENTRNLHRAVNSDVEQVQARRQSIISNQSAVEATEIGY 393

Query: 362 DAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQL 414
             G     D++D    L+ +  N  +  Y Y    + L +  G L+   +  L
Sbjct: 394 QVGTRNIVDVLDAQRQLYTSVRNYNNSRYDYILDNLRLKQAAGTLSPGDLQDL 446