Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., type I secretion outer membrane protein, TolC family from Pseudomonas stutzeri RCH2

 Score =  104 bits (260), Expect = 5e-27
 Identities = 100/433 (23%), Positives = 179/433 (41%), Gaps = 61/433 (14%)

Query: 29  WQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQ----NGSSS--- 81
           +QQA   + D   A    +  ++    A++ LLP+LS  A ++ +E+      GS+S   
Sbjct: 37  YQQAVNNNADLAAARAQFRARQEIVPQARAGLLPNLSAGAELSDTETDVDTSRGSTSLSR 96

Query: 82  ----YGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFALAEAQSN 137
               Y AT+ Q ++ + +W  L  A A    A +E + A   L  Q   +YFA+  AQ N
Sbjct: 97  SGTAYQATLSQPIFRADRWFQLKAAQAVSEQAAIEYSIAEQDLILQSAQSYFAVLRAQDN 156

Query: 138 LTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQL 197
           L   + ++A   + L  A +R+  G              L +++ +L AQA  +T R+  
Sbjct: 157 LAAVKAEEAAFKRQLDQANERFEVG--------------LSDKTDVLEAQAGFDTARANR 202

Query: 198 SI--------------LINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIA 243
           SI              L N     ++ +    P  + P   E   W+  A   +  LL  
Sbjct: 203 SIAQRQVDDAFQALFTLTNREYIALEGIRHTLPVLA-PAPNEAKAWVDTATRQNLNLLAV 261

Query: 244 IQKVAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEFN--------------------- 282
              V  ++   +Q +SG+ P+L A A Y+ GD  +  F+                     
Sbjct: 262 NYAVTAAEETLRQRRSGHAPTLDAVASYRKGDNDSLGFSNSQNIPGFDMPRYTGDVEQRS 321

Query: 283 AGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITM 342
            GL L+IP+   G T S + +A+     ++QQ+  +   + ++ R   + V  + +Q+  
Sbjct: 322 IGLQLNIPLYSGGLTTSQSREAYYQLSQSEQQRESLRRQVVESTRNLHRAVNTDIEQVEA 381

Query: 343 ADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKL 402
             Q +      L + +  +  G     D++D    L+ A  +  +  Y Y    + L + 
Sbjct: 382 RRQSIISNQSALEATEIGYQVGTRNIVDVLDTQRRLYGAVRDYNNARYDYILDNLRLKQA 441

Query: 403 TGQLNDNAIAQLS 415
            G LN + + QL+
Sbjct: 442 AGTLNPDDLQQLA 454