Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score =  103 bits (257), Expect = 1e-26
 Identities = 90/413 (21%), Positives = 173/413 (41%), Gaps = 27/413 (6%)

Query: 29  WQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQ---------NGS 79
           +QQA   + D   +       ++    A++ LLP++SGSA  + + +             
Sbjct: 36  YQQAVDNNADLAASRADYDARKEAVPQARAGLLPNISGSAQNSSTRTSIDQPRAVASRSG 95

Query: 80  SSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFALAEAQSNLT 139
           + Y AT+ Q ++ + +W  L  A+A    A LE +     L  Q   +YF++  AQ NL 
Sbjct: 96  NLYQATLSQPIFRADRWFQLQAAEASNEQAALELSATEQNLILQSAQSYFSVLRAQDNLA 155

Query: 140 LAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQLSI 199
             + ++A   + L  A +R+  G     ++ + + +     ++ L AQ ++E     L  
Sbjct: 156 STKAEEAAFKRQLDQANERFDVGLSDKTDVLQAQASYDTSRASRLIAQRQVEDAFQALVT 215

Query: 200 LINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQS 259
           L N     ++ +    P  + P   +   W+  A   +  LL +   V  ++   +Q ++
Sbjct: 216 LTNREYNSIEGIVHTLPVLA-PTPNDAKAWVDTAAQQNLNLLASNYAVNAAEETLRQRKA 274

Query: 260 GYYPSLRASAGYQDGDQ------------RN-----GEFNAGLTLSIPIDLNGATRSDNE 302
           G+ P+L A A YQ GD             RN      + + G+ L+IPI   G T S   
Sbjct: 275 GHAPTLDAVATYQRGDNDALGFSNPNYTGRNYGGDVEQRSIGVQLNIPIYSGGLTSSQVR 334

Query: 303 KAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLFD 362
           +A+     ++Q++  +   + +N R   + V  + +Q+    Q +      L + +  + 
Sbjct: 335 EAYARLSQSEQRRESLRRQVVENTRNLHRAVNTDVEQVQARKQSIISNQSALEATEIGYQ 394

Query: 363 AGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQLS 415
            G     D++D    L+ +  +  +  Y Y    + L +  G LN   +  LS
Sbjct: 395 VGTRNIVDVLDAQRQLYASVRDYNNTRYDYILDNLRLKQAAGTLNPGDLQDLS 447