Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., type I secretion outer membrane protein, TolC (RefSeq) from Shewanella amazonensis SB2B

 Score = 71.2 bits (173), Expect = 6e-17
 Identities = 85/439 (19%), Positives = 174/439 (39%), Gaps = 42/439 (9%)

Query: 8   ACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           A  +  +M   +A A+++EQA       +PD   A    +  E+    A S  +P++  +
Sbjct: 15  AAAIGGIMMPMAASAMTLEQAVAHTLDSNPDLRAAFNRFKAREEQVSQAISGYMPTVDIT 74

Query: 68  AGMNWSESQNGSS----------------SYGATIEQTLWDS-RKWSALDKADADWVLAQ 110
            G  W ++ + ++                  G +I Q L+D     S +D+   +    Q
Sbjct: 75  GGWGWEQTDSPATRRRFGREDGDFELKRGEAGISIRQMLFDGFYTASEVDRLSFEASADQ 134

Query: 111 LERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELE 170
                A   +A  +   Y     A+  +TLA++  A   ++    +QR  +G     +L 
Sbjct: 135 WALFAAAEDMALDVAKVYVNYIRAEQVMTLAEKNLATHKEIYDQIKQRTDSGLGSIADLS 194

Query: 171 ELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWP-FSAELDDW 229
           ++        + +++A+      ++Q + +++  AP     D   P P       +L   
Sbjct: 195 QITGRLARANANVISARNNFFDAKAQFARVVD-KAPD----DMIVPVPDADMLPTDLSTS 249

Query: 230 LTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEFNAGLTLSI 289
           ++ A+++ P L  A   +  ++  +  +QS YYP +         +  +GE     T + 
Sbjct: 250 VSLAQENHPVLKSAAADINAAENERSSAQSSYYPRVTLELDGNWNNNLDGEDGIAGTGAF 309

Query: 290 PIDLNGATRSDNEKAHLNWL-------MAQQQQRKVEIGLHQNLRQQ-----IQQVEIEW 337
             D+ G          + +        +A++++   +IG  + +RQ+     ++ V + W
Sbjct: 310 RTDVGGYNNDLVAMVRVRYNLFAGGKDLAREKEAAYKIGEAKEIRQRAYREVVEGVNLAW 369

Query: 338 QQITMADQQVTH-RDKVLRSKQ------QLFDAGLAEASDLIDVHNSLFRAKHNLASRWY 390
               M   Q  + R+ V  +K       Q F+ G     DL+D  N LF A+ +     +
Sbjct: 370 NAYEMLTPQKDYIREHVKAAKDTQVAYTQQFNLGQRTLLDLLDTENELFEARKDYLQAEF 429

Query: 391 SYWRQRIELLKLTGQLNDN 409
                +  +L  TG+L D+
Sbjct: 430 DEIVAKYRVLNATGRLLDS 448



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 38/205 (18%), Positives = 84/205 (40%), Gaps = 28/205 (13%)

Query: 235 DHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGY----------------QDGDQRN 278
           D +P+L  A  +    +    Q+ SGY P++  + G+                +DGD   
Sbjct: 41  DSNPDLRAAFNRFKAREEQVSQAISGYMPTVDITGGWGWEQTDSPATRRRFGREDGDFEL 100

Query: 279 GEFNAGLTLSIPIDLNGATRSDNEKAHLN-----W-LMAQQQQRKVEIGLHQNLRQQIQQ 332
               AG+++   +     T S+ ++         W L A  +   +++      +  +  
Sbjct: 101 KRGEAGISIRQMLFDGFYTASEVDRLSFEASADQWALFAAAEDMALDVA-----KVYVNY 155

Query: 333 VEIEWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSY 392
           +  E Q +T+A++ +    ++    +Q  D+GL   +DL  +   L RA  N+ S   ++
Sbjct: 156 IRAE-QVMTLAEKNLATHKEIYDQIKQRTDSGLGSIADLSQITGRLARANANVISARNNF 214

Query: 393 WRQRIELLKLTGQLNDNAIAQLSGA 417
           +  + +  ++  +  D+ I  +  A
Sbjct: 215 FDAKAQFARVVDKAPDDMIVPVPDA 239