Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., outer membrane channel protein (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (270), Expect = 3e-28
 Identities = 102/433 (23%), Positives = 184/433 (42%), Gaps = 24/433 (5%)

Query: 7   TACVLTSLMASSSAF-ALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLS 65
           T C   +L A++SA  A  + Q +QQA    P A  A+       +     ++ LLP++S
Sbjct: 14  TLCAALTLAATTSAVHADDLLQIYQQALTNDPIALQAQAQRDRLYEQIEENRAPLLPTIS 73

Query: 66  GSAGM--NWS----ESQNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQ 119
            S G   +W+    +  N     G +++Q ++D   W  LD A+    LA  + + AY  
Sbjct: 74  ASVGYGKSWTNVDDDKYNSGLDAGVSLKQVIYDHSAWVGLDLAE----LAASQADAAYAS 129

Query: 120 LAHQLL----SAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVN 175
               L+     AYF +  A+ N      ++    + L   +QR+  G     ++ E +  
Sbjct: 130 TLQSLIIRVTGAYFDVLAAKDNYEFKGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ 189

Query: 176 QLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKD 235
                ++ + A+ +L      L  +       +D +DT   T   P  A  +DWL  A+ 
Sbjct: 190 YDLARASEILAENQLINSYEALREITGIDHKSIDILDTTRFTAVPPTPAMPNDWLKMAET 249

Query: 236 HSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGY--------QDGDQRN-GEFNAGLT 286
            S +LL       I+Q      ++G+ PSL  +AGY        Q GD  +    N GLT
Sbjct: 250 SSVDLLTTRIGKDIAQQTISLYKAGHMPSLSLNAGYTTNLNQKNQAGDLSDYDNANVGLT 309

Query: 287 LSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQ 346
           LS+PI       S   +A   ++ A ++  +    + +++R     V      I   +Q 
Sbjct: 310 LSVPIFEGFKVSSKVNQAQYQYVEASEKMEQTYRKVVKDVRNNFNNVGASISSIRAYEQS 369

Query: 347 VTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQL 406
           V   +  L++ Q  F+ G     D+++    L+ +K  L++  Y Y    + L + TG L
Sbjct: 370 VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRQLSNARYGYINSILALKQATGTL 429

Query: 407 NDNAIAQLSGAFR 419
           +++ +  ++   +
Sbjct: 430 SEDDVIAINNGLK 442