Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., TolC family type I secretion outer membrane protein (RefSeq) from Shewanella loihica PV-4

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 95/453 (20%), Positives = 174/453 (38%), Gaps = 74/453 (16%)

Query: 8   ACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           A  +++++   +A + ++EQA       +PD  IA    +  E+    A +  +P++  S
Sbjct: 15  ALAISAMLIPGAASSQTLEQAVAHTLDTNPDIRIAFNRFKAREEQVNQAIAGYMPTVDIS 74

Query: 68  AGMNWSESQNGSS--------------------SYGATIEQTLWDSRKWSA-LDKADADW 106
            G  W ++ + S+                      G +I+Q L+D    S+ +D+   + 
Sbjct: 75  GGYGWEQTNSPSTRRRAGQGDVDKDGVIELMRGEVGFSIKQMLFDGFYTSSEVDRFSFEA 134

Query: 107 VLAQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKS 166
              Q     A   +A  +   Y     ++  LTLA++       +    +QR  +G    
Sbjct: 135 SADQWALFAAAEDIALDVAKVYVNYIRSEQVLTLAEKNLQSHKDIYDQIKQRTDSGLGSV 194

Query: 167 VELEELRVNQLDEESTILNAQAELETKRSQLSILI-----NASAPQVDEVDTQTPTPSWP 221
            +L ++        + ++ A+      ++Q   ++     N   P  D  D   PT    
Sbjct: 195 ADLSQITGRLARANANVIAAKNNFFDAKAQFIRIVEKEPENLIVPVPD--DDMLPT---- 248

Query: 222 FSAELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEF 281
               L D L  A+++ P L  A   ++ ++  +  +QS YYP L    G    D  +GE 
Sbjct: 249 ---NLTDGLKVAQENHPILKSAASDISAAENERSSAQSNYYPKLSLELGGNWNDNLDGE- 304

Query: 282 NAGLTLSIPIDLNGATRSDNEKAHLNWL----------------MAQQQQRKVEIGLHQN 325
                     D   A  S N   H N L                +A++++   +IG  + 
Sbjct: 305 ----------DGYSAFASQNVGGHNNDLIAMVRVKYNLFAGGKDLAREKEAAYKIGEAKE 354

Query: 326 LRQQ-----IQQVEIEWQQITMADQQVTH-RDKVLRSK------QQLFDAGLAEASDLID 373
           +RQ+     ++ V + W    M + Q  + RD V+ +K       Q F+ G     DL+D
Sbjct: 355 IRQRAYRQVVEGVNLAWNAYEMLEPQKLYIRDHVIAAKDTQVAYSQQFNLGQRTLLDLLD 414

Query: 374 VHNSLFRAKHNLASRWYSYWRQRIELLKLTGQL 406
             N LF A+ +     Y        +L  TG+L
Sbjct: 415 TENELFEARKDYLDAEYDEIISEYRILNATGRL 447



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 42/249 (16%), Positives = 97/249 (38%), Gaps = 33/249 (13%)

Query: 184 LNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIA 243
           ++ Q   + KRS +++ I+A              P    S  L+  +    D +P++ IA
Sbjct: 1   MSKQTMHQLKRSAMALAISAML-----------IPGAASSQTLEQAVAHTLDTNPDIRIA 49

Query: 244 IQKVAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEFNAGLTLSIPIDLNGATRSDNEK 303
             +    +    Q+ +GY P++  S GY   +Q N            +D +G       +
Sbjct: 50  FNRFKAREEQVNQAIAGYMPTVDISGGY-GWEQTNSPSTRRRAGQGDVDKDGVIELMRGE 108

Query: 304 AHLN---------WLMAQQQQRKVEIGLHQ--------NLRQQIQQVEIEW----QQITM 342
              +         +  ++  +   E    Q        ++   + +V + +    Q +T+
Sbjct: 109 VGFSIKQMLFDGFYTSSEVDRFSFEASADQWALFAAAEDIALDVAKVYVNYIRSEQVLTL 168

Query: 343 ADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKL 402
           A++ +     +    +Q  D+GL   +DL  +   L RA  N+ +   +++  + + +++
Sbjct: 169 AEKNLQSHKDIYDQIKQRTDSGLGSVADLSQITGRLARANANVIAAKNNFFDAKAQFIRI 228

Query: 403 TGQLNDNAI 411
             +  +N I
Sbjct: 229 VEKEPENLI 237