Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., agglutination protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 67.4 bits (163), Expect = 9e-16
 Identities = 87/449 (19%), Positives = 180/449 (40%), Gaps = 60/449 (13%)

Query: 8   ACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           A +L++++   SA + ++EQA       +PD  +A    +  E+    A +  +P++  +
Sbjct: 15  AVLLSAILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDLT 74

Query: 68  AGMNWSESQNGSS--------------------SYGATIEQTLWDSRKWSA-LDKADADW 106
            G  + ++ + S+                     +G +++Q L+D    S+ +D+   + 
Sbjct: 75  GGYGYEQTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRYSFEA 134

Query: 107 VLAQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKS 166
              Q     A   +A  +  AY         L LA++      ++    +QR  +G   +
Sbjct: 135 SADQWALLAAAEDMALDVSKAYLNYLRTDEVLKLAEKNLNSHKEIYDQIKQRTDSGLGST 194

Query: 167 VELEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPF-SAE 225
            +L ++        + +++A+  L   ++Q   ++ A     D VD   P P       +
Sbjct: 195 ADLSQISGRLARANANVISARNNLLDAKAQFVRVVAA-----DPVDLIQPVPDADMLPKD 249

Query: 226 LDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYP--------SLRASAGYQDG--- 274
           L+  +  A+ + P L  A   +  ++  +  +Q+ YYP        S     G +DG   
Sbjct: 250 LNSSIADAEKNHPILKSAANDIRAAENERSSTQANYYPQVSLELNGSWNNDVGGEDGVSA 309

Query: 275 --DQRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQ 332
              Q  G ++  +   + +  N      +        +A++++   ++   + +RQ+ Q+
Sbjct: 310 IASQNVGGYSNDIVAMVRVKYNLFAGGKD--------LAREKESAYKLSEAKEIRQRAQR 361

Query: 333 -----VEIEWQQITM-ADQQVTHRDKVLRSKQ------QLFDAGLAEASDLIDVHNSLFR 380
                V + W    M A Q+   RD V+ +K       Q F+ G     DL+D  N LF 
Sbjct: 362 EVVEGVNLAWNAYEMLAPQKQYIRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFE 421

Query: 381 AKHNLASRWYSYWRQRIELLKLTGQLNDN 409
           A+ +     Y     +  +L  TG+L D+
Sbjct: 422 ARKDYLQAEYDETIAKYRVLNSTGRLLDS 450