Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 3e-27
 Identities = 93/425 (21%), Positives = 181/425 (42%), Gaps = 14/425 (3%)

Query: 9   CVLTSLMASSSAF-ALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           CV  +L AS+ A  A  + Q +QQA    P    A+       +     ++ LLP++S +
Sbjct: 9   CVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTISAN 68

Query: 68  AGMN--WSESQNGSSSYGATIE--QTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQ 123
            G +  W++ ++ SS    +++  Q ++D   W  L  A+     A      A   L  +
Sbjct: 69  VGYDKAWNDPRDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLISR 128

Query: 124 LLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTI 183
           +  AYF +  A+ N      ++    + L   +QR+  G     ++ E +       ++ 
Sbjct: 129 VTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQYDLASASE 188

Query: 184 LNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIA 243
           + A+  L      L  +       ++ +DT   +   P  +   DWL  A+ +S +L+  
Sbjct: 189 ILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIAETNSVDLMTQ 248

Query: 244 IQKVAISQIAKQQSQSGYYPSLRASAGYQDG-DQRNGE--------FNAGLTLSIPIDLN 294
                I+Q      ++G+ PSL  +AGY  G +Q+ G+         + G+ LS+PI   
Sbjct: 249 RIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGINLSVPIFEG 308

Query: 295 GATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVL 354
               S  ++A   ++ A ++  +   G+ +N+R     V      I   +Q V   +  L
Sbjct: 309 FKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQSVISSESAL 368

Query: 355 RSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQL 414
           ++ Q  F+ G     D+++    L+ +K  L+   YSY    + L +  G LN++ +  +
Sbjct: 369 KATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTLNEDDVIAI 428

Query: 415 SGAFR 419
           +   +
Sbjct: 429 NNGLK 433