Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., outer membrane efflux protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 51.2 bits (121), Expect = 6e-11
 Identities = 87/435 (20%), Positives = 175/435 (40%), Gaps = 40/435 (9%)

Query: 3   KGFLTACVLTSLMASSSAFA--LSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDL 60
           +  +  C+L S   S++       +  A ++A + +     +  +   +E+ +  A+   
Sbjct: 7   RSLMAVCILLSGFTSAALAGDDYDMASAVEKALRDNQGVVSSGAARDAAEEGRKSARGAF 66

Query: 61  LPSLSGSAGMN---------WSESQNGSSSYGATIEQTLWDSRK-WSALDKADADWVLAQ 110
            P+LS + G             E  N + ++   + Q L+      S   KA  +    +
Sbjct: 67  GPALSTTYGYKRLDEKPVTFGRELDNDTYTWTMGVRQPLFTGFNILSTYQKAALEKDRKE 126

Query: 111 LERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELE 170
            E ++    LA  +  A+    +AQ ++  A          L + +  Y  G    +++ 
Sbjct: 127 AELSKTRLTLALAVQQAFLTYLKAQQDVRSANDALVRLRDQLKVTQAFYDVGLRPRLDVL 186

Query: 171 ELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSW-PFSAELDDW 229
           +  V+    E+  + A+  L+T++++L+ L+   A  V+   + + T  + PF+   +  
Sbjct: 187 QAEVDLSKAETDFIKAENALDTQKARLNTLL---ALPVETASSFSGTLEYRPFTRPFEAC 243

Query: 230 LTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEFNAGLTLSI 289
           L  A    P++ +A + + I+      + SGYYP  + SAG+    Q +    +G TL  
Sbjct: 244 LEQAYRQRPDMHMAAKAIEIAGKDTTIASSGYYP--QVSAGFDWATQGDHPEASGSTL-- 299

Query: 290 PIDLNGATR-SDNEKAHLN---W---LMAQQQQRKVEIGL---HQNLRQQIQ-------- 331
             D  G T+ S N  A +N   W       QQ +++E  +     NLRQ+I         
Sbjct: 300 --DRTGYTQWSTNVTASMNVFEWGRTYYGVQQAKQIESKVRADEANLRQEIAYEVKSRLL 357

Query: 332 QVEIEWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYS 391
            +    ++I +A + +    +  R     + A +   +D++D    L  A+  L      
Sbjct: 358 AISESGKRIVVAHKALDQAHEAYRMALARYQAQVGTNTDVLDAQAKLTAAEAGLTGAKAD 417

Query: 392 YWRQRIELLKLTGQL 406
           Y     +L    G+L
Sbjct: 418 YLVALAQLYASLGEL 432



 Score = 48.1 bits (113), Expect = 5e-10
 Identities = 38/203 (18%), Positives = 94/203 (46%), Gaps = 17/203 (8%)

Query: 21  FALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQNGSS 80
           F    E   +QA +Q PD H+A  +++++ +D  +A S   P +  SAG +W+   +   
Sbjct: 236 FTRPFEACLEQAYRQRPDMHMAAKAIEIAGKDTTIASSGYYPQV--SAGFDWATQGDHPE 293

Query: 81  SYGATIEQ---TLWDSRKWSALDKAD----------ADWVLAQLERNQA--YNQLAHQLL 125
           + G+T+++   T W +   ++++  +          A  + +++  ++A    ++A+++ 
Sbjct: 294 ASGSTLDRTGYTQWSTNVTASMNVFEWGRTYYGVQQAKQIESKVRADEANLRQEIAYEVK 353

Query: 126 SAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILN 185
           S   A++E+   + +A +      +   +A  RY A    + ++ + +      E+ +  
Sbjct: 354 SRLLAISESGKRIVVAHKALDQAHEAYRMALARYQAQVGTNTDVLDAQAKLTAAEAGLTG 413

Query: 186 AQAELETKRSQLSILINASAPQV 208
           A+A+     +QL   +    P +
Sbjct: 414 AKADYLVALAQLYASLGELRPDL 436