Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family from Paraburkholderia bryophila 376MFSha3.1

 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 82/416 (19%), Positives = 159/416 (38%), Gaps = 55/416 (13%)

Query: 32  AKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGM--------------NWSESQN 77
           A   SPD HIA+  ++ S       ++D LP LS +A                  S   +
Sbjct: 80  ALAHSPDVHIAQARLRESRAQLQSQRADALPKLSVNAAALRTREPDLSALSSAGSSGGSS 139

Query: 78  GSSSYGATIEQTLWDSRKWS---------ALDKADADWVLAQLERNQAYNQLAHQLLSAY 128
           GSS  G     T      W          A++ A A+      +       LA ++   Y
Sbjct: 140 GSSGRGPLQLYTAGFDASWEIDLFGGTRRAIEAASANAEAVDADLADTQVSLAAEVAQTY 199

Query: 129 FALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQA 188
             L + Q+ L LA+++     ++L + +QR   G    +++E L     +  ST++   A
Sbjct: 200 IDLRDQQTRLELARRQADIEQKMLTLTQQRRERGTAADIDVERLTTQVENTRSTLIPLDA 259

Query: 189 ELETKRSQLSILINASAPQVD-EVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQKV 247
           ++     +L++L   +   +D ++ +  P P  P +  + D  +A     P++  A +++
Sbjct: 260 QMSDSLDRLAVLTGRAPGALDQQLASARPLPPMPATVPIGD-PSAMLQRRPDIRAAERRL 318

Query: 248 AISQIAKQQSQSGYYP--SLRASAGYQDGDQRN-----------------GEFNAGLTLS 288
           A S     +  + ++P  +L    G+   D  +                   F+ G TL 
Sbjct: 319 ASSNAQIGEHVADFFPKVTLFGDIGFSASDPGHLIRKSNFSWITAPYLQWNAFDFGRTLG 378

Query: 289 IPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVT 348
             +    A+R + E  +   ++   Q     +  + + R+ +         +   +   T
Sbjct: 379 -SVHAAEASRDEAEARYTKAVLGALQDANSSLSRYGHQREHV-------VTLLKVETSAT 430

Query: 349 HRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTG 404
           H   ++R   Q + AG+A   DL+D     F A+ N+ +      +  + L K  G
Sbjct: 431 HSAALMR---QRYTAGVATLIDLLDTQRQEFSAQQNVVAGQAELLKDFVSLQKSLG 483



 Score = 40.0 bits (92), Expect = 2e-07
 Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 225 ELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSL------------------- 265
           +L+D + AA  HSP++ IA  ++  S+   Q  ++   P L                   
Sbjct: 72  QLNDLIAAALAHSPDVHIAQARLRESRAQLQSQRADALPKLSVNAAALRTREPDLSALSS 131

Query: 266 RASAGYQDGDQRNGE---FNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGL 322
             S+G   G    G    + AG   S  IDL G TR   E A  N           ++ L
Sbjct: 132 AGSSGGSSGSSGRGPLQLYTAGFDASWEIDLFGGTRRAIEAASANAEAVDADLADTQVSL 191

Query: 323 HQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDL 371
              + Q    +  +  ++ +A +Q     K+L   QQ  + G A   D+
Sbjct: 192 AAEVAQTYIDLRDQQTRLELARRQADIEQKMLTLTQQRRERGTAADIDV 240