Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., outer membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 63.2 bits (152), Expect = 2e-14
 Identities = 79/376 (21%), Positives = 152/376 (40%), Gaps = 44/376 (11%)

Query: 6   LTACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLS 65
           L    L SL A +    L +E+    A   + D   AE ++  S + +  A++DL P LS
Sbjct: 10  LCGFALGSLSALAQQSPL-LEKYRTMALDYNHDLKAAEKNIAASMEVEKSARADLKPKLS 68

Query: 66  GSAGMNWSES-----------------QNGSSSYGATI---EQTLWDSRKWSALDKADAD 105
           G+A   ++E+                 +    +YG ++   +      R   ++  A   
Sbjct: 69  GTANFQYTENPLELTLDVPSLGLSRTVEGKQLNYGGSLSILQPVYTGGRVLESIRMAQHQ 128

Query: 106 WVLAQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIK 165
              A  +     + + +Q    Y++    Q  +T+A+  +   A L+   ++R   G + 
Sbjct: 129 QSFAANQAKALNDAVCYQTDIQYWSAVARQEIVTVAEDFRNSIAALVKTIKERVEVGLVD 188

Query: 166 SVELEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAE 225
             +L    V   + E  +L AQ+  ET R  L+ +I        E+D+Q P         
Sbjct: 189 PQDLLMAEVKLNEAEYQLLQAQSNFETGRMALNSMIGVRLEHHTELDSQIPV------VV 242

Query: 226 LDD--WLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSL-------RASAGYQDGDQ 276
           +DD  WL+      PE+ +A  ++ +++  K+ + S + P          +S GY     
Sbjct: 243 VDDSTWLSTGMAR-PEIQMAYDRIRMAESTKKLNDSQFKPQFYVGIDGSYSSPGYNFKKD 301

Query: 277 RNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKV------EIGL-HQNLRQQ 329
            +  +     +S+PI   G  +S+   +     MA+    KV      EIG+  + L Q 
Sbjct: 302 LDPNYAVYAKVSVPIFEWGKRKSEKRASSFRVGMAEDNLNKVMDQVELEIGVARKALSQA 361

Query: 330 IQQVEIEWQQITMADQ 345
           +++V +    +  A++
Sbjct: 362 MERVRLSENSLAKAEE 377



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 8/180 (4%)

Query: 26  EQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLS-------GSAGMNWSESQNG 78
           +  W       P+  +A   ++++E  K L  S   P           S G N+ +  + 
Sbjct: 245 DSTWLSTGMARPEIQMAYDRIRMAESTKKLNDSQFKPQFYVGIDGSYSSPGYNFKKDLDP 304

Query: 79  SSSYGATIEQTLWDSRKWSALDKADADWV-LAQLERNQAYNQLAHQLLSAYFALAEAQSN 137
           + +  A +   +++  K  +  +A +  V +A+   N+  +Q+  ++  A  AL++A   
Sbjct: 305 NYAVYAKVSVPIFEWGKRKSEKRASSFRVGMAEDNLNKVMDQVELEIGVARKALSQAMER 364

Query: 138 LTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQL 197
           + L++   A   +  A A +RY  GK+  VE+ + +  +   +   + A+A  +   S+L
Sbjct: 365 VRLSENSLAKAEENEAKAIERYNEGKVSVVEVIDAQTYRQTSQVNYVQAKAAAQGHYSEL 424