Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., outer membrane protein TolC, putative (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 74.7 bits (182), Expect = 6e-18
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 24/295 (8%)

Query: 125 LSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTIL 184
           ++ +FALA AQSN  +A    A+   L   A+ RY  G I   E+ +L +N+L EE+  +
Sbjct: 185 INKFFALATAQSNYDIASFNYANADTLYRYAQGRYNIGTITENEMLQLELNRLTEETNRM 244

Query: 185 NAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAI 244
           NA+ E++    +L   +     +   V   +  P   FS  LD+ L  A ++SP++    
Sbjct: 245 NARIEMDNCMQELRSYLGIQEDRELRVRINSQVPD--FSVNLDEALALAYENSPDIQAMK 302

Query: 245 QKVAISQ--IAKQQSQSGYYPSLRASAGYQDGDQ------RN--GEFNAGLTLSIPIDLN 294
           ++   S+  +A+ ++ +G    +    G     +      RN   +    L++++PI   
Sbjct: 303 RRKLESESAVARARANAGLKADIYLRFGLTQTAEKLPDAYRNLLDQQYVSLSIALPILDW 362

Query: 295 GATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMA---DQQVTHRD 351
           G  +     A  N  +   Q  +       N+R+ ++Q  ++ Q++ +A   D+    R+
Sbjct: 363 GRGKGQVRVARSNRDLVYTQVEQNRTDFELNVRKLVKQFNLQTQRVHIAARTDETAQRRN 422

Query: 352 KVLRSKQQLFDAGLAEASDLIDVHNSLFR---AKHNLASRWYSYWRQRIELLKLT 403
           +V R   +L+  G    S ++D++ S+     A+ N  S  Y+YW     L  +T
Sbjct: 423 EVAR---KLYILG---KSTILDLNASIAEKDSARRNYVSALYNYWSLYYTLRSMT 471



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 5  FLTACVLTS--LMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLP 62
          ++T  +L++  L A +    +S+EQ  + A+ +SPDA  A  S + +  +    +++ LP
Sbjct: 7  YITLGILSTELLAAQNQTMEMSLEQVVKIARLESPDARTARHSFRSAYWNYKYYRANYLP 66

Query: 63 SLSGSAGMNWSESQN 77
          SLS S+  N + + N
Sbjct: 67 SLSLSSDPNLNRAIN 81