Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., outer membrane protein TolC, putative (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 62/286 (21%), Positives = 128/286 (44%), Gaps = 12/286 (4%)

Query: 128 YFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQ 187
           +F+LA AQ+   LA++  A    L  I +QR+    I   +L  L++++++ ++T+ N  
Sbjct: 193 FFSLAMAQAEYKLAKENLASTDTLYRIGQQRHRIAAISQADLLTLKLDKVNAQNTLQNRA 252

Query: 188 AELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQKV 247
           + L  KR+  S+    +  +  +++ + P+        +D+ L   + ++P+LL   Q V
Sbjct: 253 SAL--KRAMFSLASFLNLDKNTQIELELPSRPSMMEIPVDEALRWGRSNNPQLLELKQNV 310

Query: 248 --AISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEFN--------AGLTLSIPIDLNGAT 297
             A   + + + +S +  S+ AS G+    +  G+            +++SIP+   G  
Sbjct: 311 LEAERNVDRTKKESRFNASVNASIGFNQVAENFGDVYHKPMQQDLVAVSVSIPLLDWGVR 370

Query: 298 RSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSK 357
           +     A  N  + +   R+ EI + + +   +    I+ Q I  A++ +          
Sbjct: 371 KGKYNMARNNLNVVKISARQDEISIEEEVIMTVSDFNIQQQLIASAEEALDLAILAYNET 430

Query: 358 QQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLT 403
           +Q F  G A+ + L    N    A+ N  S   +YW    ++ +LT
Sbjct: 431 RQRFIIGKADINSLTLSLNRQQEAQRNYISALQNYWLNYYKIRRLT 476