Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., TolC family type I secretion outer membrane protein (RefSeq) from Shewanella sp. ANA-3

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 91/449 (20%), Positives = 180/449 (40%), Gaps = 60/449 (13%)

Query: 8   ACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           A +L++++   SA + ++EQA       +PD  +A    +  E+    A +  +P++  +
Sbjct: 15  AVLLSAILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDIT 74

Query: 68  AGMNWSESQNGSS--------------------SYGATIEQTLWDSRKWSA-LDKADADW 106
            G  + ++ + S+                     +G +++Q L+D    S+ +D+   + 
Sbjct: 75  GGYGYEQTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRYSFEA 134

Query: 107 VLAQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKS 166
              Q     A   +A  +   Y         L LA++       +    +QR  +G   +
Sbjct: 135 SADQWALLAAAEDMALDVSKVYLNYLRTDEVLKLAEKNLNSHKDIYEQIKQRTDSGLGST 194

Query: 167 VELEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPF-SAE 225
            +L ++        + +++A+  L   ++Q   +I A     D VD   P P       +
Sbjct: 195 ADLSQITGRLARANANVISARNNLLDAKAQFIRVIAA-----DPVDLIQPVPDADLLPKD 249

Query: 226 LDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYYPSLRAS--------AGYQDG--- 274
           L+  LT A+++ P L  A   +  ++  +   Q+ YYP +            G +DG   
Sbjct: 250 LNSGLTDAQENHPILKSAANDIRAAENERSSVQASYYPQVSLELNGNWNNDVGGEDGVSA 309

Query: 275 --DQRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQ 332
              Q  G +N  L   + +  N      +        +A++++   ++G  + +RQ+ Q+
Sbjct: 310 LASQNVGGYNNDLVAMVRVRYNLFAGGKD--------LAREKETAYKLGEAKEIRQRAQR 361

Query: 333 -----VEIEWQQITM-ADQQVTHRDKVLRSKQ------QLFDAGLAEASDLIDVHNSLFR 380
                V + W    M A Q+   RD V+ +K       Q F+ G     DL+D  N LF 
Sbjct: 362 EVVEGVNLAWNAYEMLAPQKQYIRDHVMAAKDTQSAYAQQFNLGQRSLLDLLDTENELFE 421

Query: 381 AKHNLASRWYSYWRQRIELLKLTGQLNDN 409
           A+ +     Y     +  +L  TG+L D+
Sbjct: 422 ARKDYLQAEYDEIIAKYRVLNSTGRLLDS 450