Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., pyoverdine-specific efflux macA-like protein from Pseudomonas fluorescens FW300-N2E2

 Score =  105 bits (261), Expect = 3e-27
 Identities = 91/357 (25%), Positives = 174/357 (48%), Gaps = 32/357 (8%)

Query: 29  SSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAIKSQINGIVGEIYVREGQHVEQGQPLIK 88
           S +PL T  V+RG IE     +G + P   V + +Q +G + +I+V  G  V +GQ L++
Sbjct: 32  SRAPLVTAPVTRGDIENSVTTLGTLQPRRYVDVGAQASGQIQKIHVEAGDEVREGQLLVE 91

Query: 89  VRPNPTPQALTDA---STELMQSEANLESDLQRLANLERLVKQQIIPA----NYDDYVRA 141
           + P+ T +A  DA   S E ++++   +     LA  ++  +QQ + A      +D   A
Sbjct: 92  IDPS-TQKARLDAGRFSIENLKAQLQEQRAQHDLAQ-QKFHRQQQLKAGGATREEDVQTA 149

Query: 142 KADVKAKQAEVQ----QKRQNLELIRSGEASIGQAKLSSTLYAPISGTILNIKVEVGEPI 197
           +A+V+A QA +     Q RQ    +RS EA +G  +    +YAP+SGT++ +    G+ +
Sbjct: 150 QAEVRATQARIDMFQAQIRQAQASLRSDEAELGYTR----IYAPMSGTVVAVGAREGQTL 205

Query: 198 ISTESSQAATEMIQLADMKNIVFKGSVSEHDAAQLNAGMPASITVAPYPEQVINGQLTKV 257
               + Q    ++++A +  +     VSE D   +  GM A  T      +  +  + ++
Sbjct: 206 ---NAQQQTPLILRIARLSPMTVWAEVSEADIGHVKPGMTAYFTTLAGGSRRWSSTVRQI 262

Query: 258 ------AIQSERLNNPENKDGKSFDNGFQVEIGQLDIPE-NMTLRSGFSASAKITLQRAA 310
                  +++ +  +P    G+S      +    LD+   + +L +  +A       +A 
Sbjct: 263 LPVPPRPLEASQGGSPTG--GRSGSERVVLYTVLLDVDNADRSLMTDMTAQVFFVAAQAQ 320

Query: 311 DVITLPERALQFEGETPMVLIADGSAQGYTAHPVKLGLSDGVQVEILEGVAEKDSIV 367
           +V+T+P  ALQ       VL  +G  Q  T   V+ G+SD ++++I++G++E + ++
Sbjct: 321 NVLTVPTAALQDNAGQVRVLADNGDVQSRT---VRTGVSDRLRIQIVDGLSEGEQVL 374