Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  103 bits (257), Expect = 8e-27
 Identities = 95/372 (25%), Positives = 177/372 (47%), Gaps = 39/372 (10%)

Query: 27  PESSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAIKSQINGIVGEIYVREGQHVEQGQPL 86
           P+S S   T+ V+RGTIE    A+G + P   V + SQ +G + +I+ + G  V++G  L
Sbjct: 30  PDSKSSAATVTVTRGTIENSVTALGTLQPRSYVDVGSQASGQIMKIHAQVGDQVKEGDLL 89

Query: 87  IKVRPNPTPQALTDASTELMQSEANLESDLQRLANLERLVKQQII---------PANYDD 137
           +++ P+ T +A  DA+   +    NL++ LQ    L  L +Q+               +D
Sbjct: 90  VEIDPS-TQKAKLDAARYAID---NLKAQLQEQRALHELAEQKQQRQKRLAAGGATRAED 145

Query: 138 YVRAKADVKAKQAEVQQ-KRQNLE---LIRSGEASIGQAKLSSTLYAPISGTILNIKVEV 193
              A+++ +A QA V   K Q LE    +RS EA++G  +    ++AP+SGT++ +    
Sbjct: 146 VQAAESEFRATQARVDMFKAQILEAQAALRSDEAALGYTR----IFAPMSGTVVALDARE 201

Query: 194 GEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDAAQLNAGMPASITVAPYPEQVINGQ 253
           G+ +    + Q    ++++A +  +     VSE D   +  GM A  T      +  +  
Sbjct: 202 GQTL---NAQQQTPLILRIARLSPMTVWAEVSEADIGHVKPGMTAYFTTLSGGNRRWSST 258

Query: 254 LTKVAIQSERLNNPENKDGKSFDNGFQVEIGQ-------LDIP-ENMTLRSGFSASAKIT 305
           + ++     R  +  N+ G S  +  +   G+       LD+   +  L +  +A     
Sbjct: 259 VRQILPVPPRPLDQANQGGGSPSSARKNGGGRVVLYTVLLDVDNSDQALMAEMTAQIFFV 318

Query: 306 LQRAADVITLPERAL----QFEGETPMVLIADGSAQGYTAHPVKLGLSDGVQVEILEGVA 361
             +A + +T P  AL    Q + +T  VL A+G  Q      V+ G+SD ++V++L+G+ 
Sbjct: 319 ADKAENTLTAPLAALRNGAQTDRQTAQVLSANGEVQN---RQVRTGISDRLRVQVLDGLN 375

Query: 362 EKDSIVDNSMLG 373
           E + ++  + +G
Sbjct: 376 EGERLLVPASVG 387