Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 81/338 (23%), Positives = 144/338 (42%), Gaps = 48/338 (14%)

Query: 32  PLPTLNVSRGTIEKQAVAVGQIMPSHSVAIKSQINGIVGEIYVREGQHVEQGQPLIKVRP 91
           P+ +  V    + +    VG++  + SV I ++++G V  I + + Q V QGQ L+ +  
Sbjct: 65  PIASARVEAHEVAQHLSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQGQVLVHLED 124

Query: 92  NPTPQALTDASTELMQSEANLESDLQRLANLERLVKQQIIPANYDDYVRAKADVKAKQAE 151
                    A   L +++A L  + ++L   +RL+KQ  I     D   A  D+   +A 
Sbjct: 125 -------AKAKANLAEAKAYLNDERRKLGEYKRLIKQHAITQTEIDAQLASVDI--AEAR 175

Query: 152 VQQKRQNLELIRSGEASIGQAKLSSTLYAPISGTILNIKVEVGEPIISTESSQAATEMIQ 211
           +Q  + +L+                TL AP  G I  +   +G+ +         +E++ 
Sbjct: 176 LQAAQADLDY--------------HTLKAPFDGVIGLVDFSLGKLV------SVGSELVS 215

Query: 212 LADMKNIVFKGSVSEHDAAQLNAGMPASITVAPYPEQVINGQLTKVA--IQSERLNNPEN 269
           L D+ ++     + E   +Q+  GMP   + + +P +  +GQ+  +A  I SE LN    
Sbjct: 216 LDDLSSMRLDLQIPERYLSQIYLGMPVVASSSAWPGEQFHGQVVAMAPRINSETLN---L 272

Query: 270 KDGKSFDNGFQVEIGQLDIPENMTLRSGFSASAKITLQRAADVITLPERALQFEGETPMV 329
           K   +FDN             ++ LR G   SA++        + +P +AL++ G    V
Sbjct: 273 KVRVNFDN------------PSLQLRPGMLISARLDFAPVTQAV-VPVQALEYSGTKRFV 319

Query: 330 LIADGSAQGYTAHPVKLGLSDGVQVEILEGVAEKDSIV 367
            + D          V LG     QV I +G++  D IV
Sbjct: 320 YVIDSDNIARRTQ-VTLGARIDDQVLIDDGLSLGDRIV 356