Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score = 76.3 bits (186), Expect = 1e-18
 Identities = 87/352 (24%), Positives = 149/352 (42%), Gaps = 56/352 (15%)

Query: 27  PESSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAIKSQINGIVGEIYVREGQHVEQGQPL 86
           P +  P+ T   +  +I  +A AVG +  + SV ++ +  G +  I  ++G  V +G  L
Sbjct: 51  PAAPLPVETALAAPQSITDEAAAVGTLRSNESVVLRPETAGRIASIGFKDGVPVAKGTVL 110

Query: 87  IKVRPNPTPQALTDAST---ELMQSEANLESDLQRLANLERLVKQQIIPANYDDYVRAKA 143
           + +          DA+T   EL Q++AN    +      E L+ ++ I     D     A
Sbjct: 111 VAL----------DAATQEAELQQAKANHALAVTNFKRTEELLAKKFISQQSLD--TTAA 158

Query: 144 DVKAKQAEVQQKRQNLELIRSGEASIGQAKLSST-LYAPISGTILNIKVEVGEPIISTES 202
           ++K ++A V               ++ +AKL+ T + AP +G +   +V VG+ +     
Sbjct: 159 NLKVQEAAV---------------ALAEAKLAKTRIRAPFAGVVGIREVSVGDYV----- 198

Query: 203 SQAATEMIQLADMKNIVFKGSVSEHDAAQLNAGMPASITVAPYPEQVINGQLTKVAIQSE 262
            +   ++I L D++ +     + E   ++L  G    ++V   P Q     L  V     
Sbjct: 199 -KEGADLINLEDIRTLKLDFRLPELYLSRLQKGQAVEVSVDALPNQAFKAVLDAV----- 252

Query: 263 RLNNPENKDGKSFDNGFQVEI-GQLDIPENMTLRSGFSASAKITLQRAADVITLPERALQ 321
                   D     NG  + +  +LD PE + LR G  A  ++       V+ +PE+A+ 
Sbjct: 253 --------DPLVDANGRAISLRARLDNPE-LKLRPGMFARVRLLFGNRDGVLMIPEQAIV 303

Query: 322 FEGETPMVL-IADGSAQGYTAHPVKLGLSDGVQVEILEGVAEKDSIVDNSML 372
             G    V  I +G A+      VK GL    QVEIL G+A  D I+    L
Sbjct: 304 SGGGKQTVFRIEEGKAKKVE---VKTGLRRNAQVEILSGLAAGDRIITAGQL 352