Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (275), Expect = 7e-29
 Identities = 95/388 (24%), Positives = 174/388 (44%), Gaps = 30/388 (7%)

Query: 2   AKRWTLLATLVGVGLAGGYYTLTYTPESSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAI 61
           +KR  +L     + L GG Y L + PE++    T  V RG IE   +A G +  S  V++
Sbjct: 5   SKRKLILILSGLILLGGGAYFLLHKPEAAPSYVTEPVRRGDIENSVLANGMLQASKLVSV 64

Query: 62  KSQINGIVGEIYVREGQHVEQGQPLIKVRPNPTPQALTDASTELMQSEANLESDLQ--RL 119
            +Q++G +  + V  G+ V++G  + ++        L +A   L    A   +     R 
Sbjct: 65  GAQVSGQILSLSVALGEEVKKGDLIAQIDSLAQQNNLQNALASLKNINAQYRAKQAQIRQ 124

Query: 120 ANLERLVKQQII---PANYDDYVRAKADVKAKQAEVQQ---KRQNLEL-IRSGEASIGQA 172
           A LE   +QQ++    ++  D+  A+A +   QAE++Q   ++Q  E+ + S    +G  
Sbjct: 125 AKLEYTRQQQMLADKASSRADFEAAEATLTVYQAELEQLEAQKQQAEINVDSARIDLGYT 184

Query: 173 KLSSTLYAPISGTILNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDAAQL 232
           K++    AP+ GT++   VEVG+ + + +++    EM QL  M     K  +SE D   +
Sbjct: 185 KIT----APMDGTVVYSAVEVGQTVNANQTTPTIVEMAQLDTM---TVKAQISEADIVNV 237

Query: 233 NAGMPASITVAPYPEQVINGQLTKVAIQSERLNNPENKDGKSFDNGFQVEIGQLDIPE-N 291
             G P   T+   P     G L  +      ++  ++    S  +      G  D+   +
Sbjct: 238 RPGQPVYFTILGRPNHPYRGSLRAIEPGPTSMDGDDSNMSSSDSDAIYYH-GLFDVENPD 296

Query: 292 MTLRSGFSASAKITLQRAADVITLPERALQFEGETPMVLIADGSAQGYTAH--------- 342
            TLR G +A   I L ++ D + +P + L+ + +      A+  ++G             
Sbjct: 297 RTLRIGMTAQISIVLAKSDDALLVPSQVLKVKPKDKAASPAERKSRGPQYQVPVLVDNQV 356

Query: 343 ---PVKLGLSDGVQVEILEGVAEKDSIV 367
               V +G+++ +  EIL G+ E D +V
Sbjct: 357 QYVDVTVGINNKINAEILSGLKEGDQVV 384