Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., membrane fusion protein of a type I secretion system from Klebsiella michiganensis M5al

 Score =  107 bits (268), Expect = 4e-28
 Identities = 98/381 (25%), Positives = 176/381 (46%), Gaps = 28/381 (7%)

Query: 3   KRWTLLATLVGVGLAGGYYTLTYTPESSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAIK 62
           K W L    +   +A  +Y  +  P  +  L  + + RG IEK  +A G I P+  V++ 
Sbjct: 10  KAWLLALVAILATIAAVFYQRSL-PAQAESLYAVALERGDIEKVVLASGIIKPAVQVSVG 68

Query: 63  SQINGIVGEIYVREGQHVEQGQPLIKVRPNPTPQALTDASTELMQSEANLESDLQRLANL 122
           +Q++G + ++YVR+G+ V +GQ L ++ P      L +A+ +L  + A      Q+LA+ 
Sbjct: 69  AQVSGQLRKLYVRQGERVRKGQLLAEIDPTLQLSDLRNATAQLASARA------QKLASE 122

Query: 123 ERLVKQQIIPANYDDYVRAKADVKA--KQAEVQQKRQNLELIRSGEASIGQAKLS----- 175
             LV+ +   A      R  + V +  +QA+ Q   Q ++ I   EA I QA++S     
Sbjct: 123 ATLVQYRKALARERAMNRDGSGVSSDLEQAQAQYAAQ-VQQIAVNEAQIVQAEMSVQTAN 181

Query: 176 -----STLYAPISGTILNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDAA 230
                + + AP+ G +L I    G+ I+   SSQ A  ++ LAD+  +  +  +SE D  
Sbjct: 182 ANLGYTRILAPMDGEVLGIVTREGQTIV---SSQIAPTILVLADLDKMQVQTRISEADIQ 238

Query: 231 QLNAGMPASITVAPYPEQVINGQLTKVAIQSERLNNPENKDGKSFDNGFQVEI---GQLD 287
           +++ G P    V   P+    G+L  V    +     +N  G S  N     I   G  +
Sbjct: 239 KIHPGQPLWFYVIADPQTRYEGELGYVQPAPQEALEEQNA-GASAGNQQSSAIYYNGTFE 297

Query: 288 IPENM-TLRSGFSASAKITLQRAADVITLPERALQFEGETPMVLIADGSAQGYTAHPVKL 346
           +      L++  +A   I + +  DV+ +P  AL         ++   +A G     V++
Sbjct: 298 VDNRQRLLKTSMTAQVFIRIAQVKDVLRVPVAALGRSLGDERYIVMVQTASGSEERTVRI 357

Query: 347 GLSDGVQVEILEGVAEKDSIV 367
           G++D    ++LEG+   + +V
Sbjct: 358 GINDRQYAQVLEGLRPGERVV 378