Pairwise Alignments

Query, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  109 bits (272), Expect = 2e-28
 Identities = 97/390 (24%), Positives = 178/390 (45%), Gaps = 34/390 (8%)

Query: 2   AKRWTLLATLVGVGLAGGYYTLTYTPESSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAI 61
           +KR  +L     V L GG Y L + PE++    T  V RG IE   +A G +  S  V++
Sbjct: 11  SKRKLILILSGLVLLGGGAYFLLHKPEAAPSYVTEPVKRGDIENSVLANGMLQASKLVSV 70

Query: 62  KSQINGIVGEIYVREGQHVEQGQPLIKV----RPNPTPQALTDASTELMQSEANLESDLQ 117
            +Q++G +  + V  GQ V++G  + ++    + N    AL  AS + + ++   +    
Sbjct: 71  GAQVSGQIQSLPVDLGQEVKKGDLIAQIDSLAQQNNLQNAL--ASLKSINAQYRAKQAQI 128

Query: 118 RLANLERLVKQQII---PANYDDYVRAKADVKAKQAEVQQ---KRQNLEL-IRSGEASIG 170
           R A LE   +Q+++    ++  D+  A+A +   QAE++Q   ++Q  E+ + S    +G
Sbjct: 129 RQAKLEYTRQQEMLADKASSRADFETAEATLTVYQAELEQLQAQKQQAEINVDSARIDLG 188

Query: 171 QAKLSSTLYAPISGTILNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEHDAA 230
             K++    AP+ GT++   VEVG+ + + +++    EM QL  M     K  +SE D  
Sbjct: 189 YTKIT----APMDGTVVYSAVEVGQTVNANQTTPTIVEMAQLDTM---TVKAQISEADIV 241

Query: 231 QLNAGMPASITVAPYPEQVINGQLTKVAIQSERLNNPENKDGKSFDNGFQVEIGQLDIPE 290
            ++ G     T+   P     G L  +      ++  ++    S  +      G  D+  
Sbjct: 242 NVHPGQAVYFTILGRPNHPYRGTLRAIEPGPTSMDGDDSNMSSSDSDAIYYH-GLFDVEN 300

Query: 291 -NMTLRSGFSASAKITLQRAADVITLPERALQFEGETPMVLIADGSAQGYTAH------- 342
            + TLR G +A   I L +A D + +P + L+ +        +D  ++G           
Sbjct: 301 PDRTLRIGMTAQISIVLAKADDALLVPSQVLRAKPRDKAASASDRQSRGPQYQVPVLVNN 360

Query: 343 -----PVKLGLSDGVQVEILEGVAEKDSIV 367
                 V +G+++ +  EIL G+ E D +V
Sbjct: 361 QVQYVDVTVGINNKINAEILSGLNEGDQVV 390