Pairwise Alignments

Query, 344 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  213 bits (542), Expect = 6e-60
 Identities = 126/332 (37%), Positives = 195/332 (58%), Gaps = 3/332 (0%)

Query: 10  MATINDVCKLAGVSKATVSRVLNETGQVKAQTREAVLAAMQQLGYQPNSLAQALATNTTN 69
           MATI DV  LAGVS ATVSRV+N TG+V  +TR+ V  AM +L Y+PN++AQ+LA+N +N
Sbjct: 1   MATIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSN 60

Query: 70  SIGLVLPHFESSYFGSILFEAEQGAQKAGKKLLVMNSKNSEQGEKEAVATLAAQRCDAIL 129
           SIG+++   +  ++G ++ E E   + A K +++    +    EK+ V  L ++ CDA++
Sbjct: 61  SIGVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALI 120

Query: 130 LYSRHLNEVQLLELQQQHPSPLVILNRRLHHPQLHSFGLDQTQIAQLAMQHLLNLGHRQI 189
           + +  L+   L+EL Q   +P+V++NR +         L+  Q   LA +H+L  GH+QI
Sbjct: 121 VDAEILSNGYLVELCQGK-TPVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQI 179

Query: 190 ACITSPLVSETGKIRYQVYQQALHEQGIELSSSLVIEGDNTLLGGYQAMQQLLQQGISMT 249
           A I+ PL     + R + ++QAL EQGI    +L  EGD    GGY+AM QLL +G   T
Sbjct: 180 AYISGPLFKLDARERLEGHRQALAEQGIAFDENLFYEGDFREEGGYEAMAQLLSRGRDFT 239

Query: 250 AVFACNDDMALGAMRAMHEHGIHVPKQVSIIGIDNEPAAAFAIPSLSSVSLPIGELTQQA 309
           AV   ND MA GA+    E G+ VP+ +S +G DN P   +  P L++V  PI ++ + A
Sbjct: 240 AVVCANDQMASGAIAQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTVCNPIQDMGRMA 299

Query: 310 ISLAV-EIANKKPQDAQHRLYQGSLIARESTI 340
               + E+ ++      HR ++  L+ R+S I
Sbjct: 300 AHWVLREVYDQTDVTFCHR-FEPELVVRDSVI 330