Pairwise Alignments

Query, 280 a.a., sn-glycerol-3-phosphate ABC transporter permease UgpE from Vibrio cholerae E7946 ATCC 55056

Subject, 283 a.a., sugar ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  102 bits (254), Expect = 9e-27
 Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 22/279 (7%)

Query: 4   NRLSDHLILIAGALFMLVPLWLIFASSTHQPNTIVSEGLQWTLGDNLSAV--YREAWNKS 61
           NR      L    L  L+P+     +S    + +++ G  W    + + +  YREA    
Sbjct: 13  NRALYRASLPVALLIWLLPMLAALVTSIRSNDELMA-GNYWGWPQDFAMLENYREA---- 67

Query: 62  LGFAGNVTAQTMIV---NSMIMGLGFAIGKIVISMMAAYALVYFRLPYASAWFWLIFITL 118
                 +TA  M+    NS ++ +   IG I ++ MA +AL  ++    +  F       
Sbjct: 68  ------LTASPMLHYFWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVACN 121

Query: 119 LLPLEVRIIPSYEVVSNLGMLNSYTGLVLPLIASATA--TFFFRQFFKTIPDELLEAAQL 176
            +P ++ +IP  ++  +LG+ N+ TG++L  IA  T   T F R F K +P E++EAA++
Sbjct: 122 FVPQQILMIPVRDLSLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARI 181

Query: 177 DNAGPIRFFIDILFPLSKTMMAAIFIIMFVVGWNQYLWPIMMTTDEQYNTIVMGIKQILN 236
           + A     F  I+ PL +  +AA+ +++F   WN Y W +++T  +    I +G+  +  
Sbjct: 182 EGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRG 241

Query: 237 NINETSLPRYDYAFAMVILAMLPPVLVVVIFQRWFVKGL 275
                    ++   A  ILA LP V++  + Q+ FV GL
Sbjct: 242 QWTTA----WNLVSAGSILAALPSVILFFVMQKQFVAGL 276