Pairwise Alignments

Query, 434 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., Various polyols ABC transporter, periplasmic substrate-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score = 55.5 bits (132), Expect = 3e-12
 Identities = 90/419 (21%), Positives = 167/419 (39%), Gaps = 58/419 (13%)

Query: 42  VNQLATDFNASQSDYKLTPVY--KGSYTETLTAGIAAFRAGQAPNILQVFDAGA--ATIM 97
           + +L+  F A   D KL  V   +    + LT  IA  + GQ      V   G   A + 
Sbjct: 39  MQKLSKTFEAEHPDIKLNWVVLEENVLRQRLTTDIAT-QGGQ----FDVLTIGMYEAALW 93

Query: 98  SSKGVAKPVQDLMIESGYPFTAQDYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLA 157
            +KG  +P++DL       +   D    VR+  +   G +  +PF + + + YY  D+  
Sbjct: 94  GAKGWLEPMKDLPAS----YDLDDVFPSVRDGLSVK-GSLYALPFYAESSITYYRTDLFK 148

Query: 158 SVNAQAPQ--TYEQLEQVAAKLAEKGQAGFAQSL---TPWIMFENFKSRHNLPLSDKQNG 212
           +     P+  T+ Q+ + A KL +K +  +   L     W         +   ++   NG
Sbjct: 149 NAGLTMPEHPTWSQIGEFAEKLTDKAKEQYGLCLRGKAGW-------GENMALITTLANG 201

Query: 213 YQ----DLSTKIMFNSDD----MLMHVKKLKEWSDKGYYKYYGSDWDANQTPFERGEVAM 264
           Y     D   +  FN  +    +  +V  +K+    G      + ++ N   F  G+ A+
Sbjct: 202 YGARWFDEKWQPQFNGPEWKEALNFYVDNMKKSGPPG---ASSNGFNENLALFNSGKCAI 258

Query: 265 WMGSS--GSF--GGLRNRVKFNLGTTYLPYWESVTKNPTHTFIGGAALFALQGHTPAQDK 320
           W+ +S  GSF     +++V  ++G T+ P+ E   K  +  +    A+      T ++ K
Sbjct: 259 WVDASVAGSFVTDKTQSKVADHVGFTFAPH-EKTDKGTSWMYSWSLAI-----PTSSKAK 312

Query: 321 GVAAFF-AYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGYYQENPDAEVGVKQLSLPDG 379
             A  F  + T  E      KT G   V       T    Y +  P A+V ++ L + D 
Sbjct: 313 DAATVFTTWATSKEYSQLVAKTDGIANVPPGTRTSTYSDEYMKAAPFAKVTLESLKVADP 372

Query: 380 EWTK-------GYRLGYYPQVREV---MHREFDNIFSGRSTVESSLNKVEDESAKLLNR 428
           +          G +L   P+ + +   + + F    +G+ TV+ +L   +  + + + R
Sbjct: 373 KAPTLKPVPYIGIQLVTIPEFQAIGTQVGKFFSGALTGQQTVDQALTAAQSTTEREMKR 431