Pairwise Alignments

Query, 434 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., carbohydrate ABC transporter substrate-binding protein, CUT1 family from Pseudomonas syringae pv. syringae B728a

 Score =  162 bits (410), Expect = 2e-44
 Identities = 104/415 (25%), Positives = 201/415 (48%), Gaps = 13/415 (3%)

Query: 19  SASTLAATEITWWHAMGGQLGETVNQLATDFNASQSDY-KLTPVYKGSYTETLTAGIAAF 77
           +A+  AA    +W++  G  G  +  L   FNA + +  +L  V +GSY +TL   +AA+
Sbjct: 17  AANAFAAAPAEFWYSHSGAAGSAIADLCRSFNAPREEGDRLHCVRQGSYEQTLQKTVAAY 76

Query: 78  RAGQAPNILQVFDAGAATIMSSKGVAKPVQDLMIESGYPFTAQDYIAGVRNFYADNTGKM 137
           RAG  P +++++D     ++   G  +PV+ +M +    +    ++  +R +YAD+ G +
Sbjct: 77  RAGIGPALVEIYDVATPDMLLG-GATRPVEAIMADHHRAYPDDTFLPALRRYYADDHGTL 135

Query: 138 VGMPFNSSTPVLYYNKDMLASVN-AQAPQTYEQLEQVAAKLAEKG-QAGFAQSLTPWIMF 195
              PF +ST VLY ++  LA+   ++ P T+E        L + G Q     +  PWI  
Sbjct: 136 AAQPFAASTAVLYTHRKALAAAGISEPPATWEAFADALRALKKNGQQCPLVSAFAPWIWL 195

Query: 196 ENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDKGYYKYYGSDWDANQT 255
           E   +     ++ +  G      +  F+    L  +K L +W+ +G   +  +     Q 
Sbjct: 196 EQTSAAQGTDVAIRSAG----GDRYQFDEGPHLRLMKDLAQWTSQGLVVHEDATRSGQQA 251

Query: 256 -PFERGEVAMWMGSSGSFGGLRNRVKFNLGTTYLPYWESVTKNPTHTFIGGAALFALQGH 314
             F   + AM + S+G++  + + +K ++  T LP + +  +       GG++L+ ++GH
Sbjct: 252 LAFATDDCAMLLDSTGAWNVVHSTLKSDIQVTALPIYAATQRRA--NVPGGSSLWVMRGH 309

Query: 315 TPAQDKGVAAFFAYLTKPETQMNWHKTTGYVPVTNAAYDLTKQSGYYQENPDAEVGVKQL 374
           +    + V+ F A++ +P+ Q+ +   TGY+PVT AA    +      E     VG+  L
Sbjct: 310 SVRDYRLVSEFLAFVLQPDNQLIFSARTGYLPVTQAA--AARLQSAASEPSAITVGLTAL 367

Query: 375 SLPDGEWTKGYRLGYYPQVREVMHREFDNIFSGRSTVESSLNKVEDESAKLLNRF 429
              DG+ +   R G+   +R +  +E +N  +GR +++ +L +    + +LL  F
Sbjct: 368 DDIDGQPSAPLRCGFITLMRLIWSQEMENALAGRQSIDLALRQTTLRANELLGLF 422