Pairwise Alignments

Query, 434 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  118 bits (295), Expect = 4e-31
 Identities = 106/386 (27%), Positives = 170/386 (44%), Gaps = 43/386 (11%)

Query: 12  ATASGVFSASTLAATE---ITWWHAMGGQLGETVNQLATDFNASQSDYKLTPVYKGSYTE 68
           A A G  +A T +A E     +   + G+L   + ++  +FN SQ+D ++  ++ GSY  
Sbjct: 8   ALAIGFIAAGTASAKENIDFMFPAPVDGKLTMEMTRVIKEFNQSQNDVEVRGIFTGSYDT 67

Query: 69  TLTAGIAAFRAGQAPNILQVFDAGAATIMSSKGVAKPVQDLMI---ESGYPFTAQDYIAG 125
           T     AA ++GQ P ++ +  A     ++ K    P+ +L     +   PF  Q++   
Sbjct: 68  TKVKAEAAAKSGQPPALV-IMSANFTADLAIKNEILPMDELFKFGDQKATPFLTQNFWPA 126

Query: 126 VRNFYADNTGKMVGMPFNSSTPVLYYNKDMLASVNAQA-PQTYEQLEQVAAKLAE--KGQ 182
           +R   A   G    +PF++STP+LYYNKDM A     A P+ +++L + + KL +  KGQ
Sbjct: 127 MRQ-NAQLNGVTYAIPFHNSTPILYYNKDMFAKAGITAPPKDWDELLEDSKKLTDSAKGQ 185

Query: 183 AGFAQSLT-----PWIMFENFKSRHNLPLSDKQNGYQ----DLSTKIMFNSDDMLMHVKK 233
            G     T      WI          L    + NG Q    D   ++ ++    L     
Sbjct: 186 WGIMLPSTNDDYGGWI----------LSALTRANGGQYYNADYPGEVYYDKPSTL---GA 232

Query: 234 LKEWSDKGYYKYYGSDWDAN----QTPFERGEVAMWMGSSGSFGGLRNRVK-FNLGTTYL 288
           L+ W +  Y          N       F  G++ M M S+G+ G +R   K F LG   +
Sbjct: 233 LRFWQNLVYRDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENTKDFELGVAMM 292

Query: 289 PYWESVTKNPTHTFIGGAALFALQGHTPAQDKGVAAFFAYLTKPETQMNWHKTTGYVPVT 348
           P      K      IGGA+L + +G +  Q K    F  YL  P+    W + TGY    
Sbjct: 293 P-----AKVRNGVTIGGASLVSFKGISDDQKKAAYTFLQYLVSPKVNGAWSRFTGYFSPR 347

Query: 349 NAAYDLTKQSGYYQENPDAEVGVKQL 374
            A+YD  +   Y  ++P A + ++QL
Sbjct: 348 MASYDTPEMKEYLAKDPRAAIALEQL 373