Pairwise Alignments

Query, 457 a.a., flagellar motor protein MotA from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., MotA/TolQ/ExbB proton channel family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  285 bits (730), Expect = 2e-81
 Identities = 180/452 (39%), Positives = 253/452 (55%), Gaps = 20/452 (4%)

Query: 3   LKKTTLALALSLPFAFASVANASNS---LVQQATQEKAQQQQHNLQREAGFV----QTAQ 55
           +    +A +LSL     S A+A  +   L+QQ   E+  + + N +REA F       A 
Sbjct: 5   ISTAVVAASLSLTAGMVSAADAPKTIDQLLQQVKTERTAEGKVNAKREAEFKAERGDKAS 64

Query: 56  ELQAAKAELLAERNRLQKEADQLSSQFSDNENTLARLEETLRLETGSLGEMFGVVRQNAK 115
            LQ  K+ L AE+ R Q     L+  F DNE  +A+LEE L+   G LGEMFGVV+  A 
Sbjct: 65  LLQREKSALAAEKQRGQ----DLNQAFIDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAG 120

Query: 116 ELQSELDQSVTGVEPRAHQQSIDDVVAAKTLPSMAQLRGLWQAMSEEIRASGQVQTTEIQ 175
           +   +L  S    +       I D+ + K LP + +L   WQ    E+  SG+V   E  
Sbjct: 121 DFAGKLVGSNVSAQYPKRDVFIADLGSRKQLPKIEELEKFWQEQLFEMAESGKVVKFEAA 180

Query: 176 WLNGQGETQTVPALRLGSLGLISEQGYVKWDNARQQALSYQQLPSDFPTFSHIRTLVDGD 235
             +  G        R+GS  L ++  YV ++      L   Q  S  P    +  +   +
Sbjct: 181 VTDIDGNVVNTTVHRIGSFNLTADGKYVVYN----PELGLIQQLSAQPEGYQVAPIAKWE 236

Query: 236 VVT-----MKVDPSRGVLLEQLALTPTLSQRLQAGGVIGNVILVLLGVGLIIALYRGAIL 290
             T     + +DP+RG LL       +   R++AGGVIG +I+ LL +GL+I L R   L
Sbjct: 237 ATTSGAAKLYIDPARGTLLNIFTQKASFQDRIEAGGVIGYIIIGLLALGLLIGLERLLTL 296

Query: 291 ATLRQKIKAQLKNPEQPGNNPLGRILAVYNKEQQRSVEALELRLLEAVVDEQNHLETGLS 350
             +  K+K+Q KN   PGNN LGRIL VY   +   VE LEL+L EA++ E   +ET +S
Sbjct: 297 FVIGSKVKSQAKNVANPGNNALGRILKVYQDNKDADVETLELKLDEAILKETPAIETRIS 356

Query: 351 MLKLLAALAPMLGLLGTVTGMIETFQVITQFGNGDPKVMAGGISMALVTTVEGLIAAIPL 410
           ++K+LAA+APM+GLLGTVTGMI TFQ I  FG GDPK+MAGGISMALVTTV+GL+AA+PL
Sbjct: 357 IIKVLAAIAPMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGISMALVTTVQGLVAALPL 416

Query: 411 LLAHNILSAQAEAIRNILEKQGIGLVAQQAER 442
           +L H I+ A+++ I   LE+Q  G++A+ AE+
Sbjct: 417 MLVHAIVVARSKTIVQTLEEQSAGIIAEHAEK 448