Pairwise Alignments

Query, 457 a.a., flagellar motor protein MotA from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Shewanella loihica PV-4

 Score =  287 bits (734), Expect = 6e-82
 Identities = 178/444 (40%), Positives = 256/444 (57%), Gaps = 14/444 (3%)

Query: 8   LALALSLPFAFASVANASNS---LVQQATQEKAQQQQHNLQREAGFV----QTAQELQAA 60
           +A +LSL     S A+A  +   L++Q   ++A   + N +REA F       A  L+  
Sbjct: 10  VAASLSLTAGMVSAADAPKNIDQLLKQVQTDRANAAKVNKKREAEFQAERGDKAALLKRE 69

Query: 61  KAELLAERNRLQKEADQLSSQFSDNENTLARLEETLRLETGSLGEMFGVVRQNAKELQSE 120
           KA L AE  R       LS  F+DNE  +A+LEE  ++  G LGEMFGVV+  A +   +
Sbjct: 70  KAALAAEEQR----GKDLSQAFADNERKIAQLEEDRKIAQGDLGEMFGVVKGEAGDFAGK 125

Query: 121 LDQSVTGVEPRAHQQSIDDVVAAKTLPSMAQLRGLWQAMSEEIRASGQVQTTEIQWLNGQ 180
           L  S    +       I ++ A K LP + +L   W+    E+  SG+V T E       
Sbjct: 126 LVSSNVSAQFPGRDAFIAELGARKELPKIEELEKFWEEQLFEMAESGKVVTFEGAVTGID 185

Query: 181 GETQTVPALRLGSLGLISEQGYVKW--DNARQQALSYQQLPSDFPTFSHIRTLVDGDVVT 238
           G        R+G+  L+++  YV +  D    Q LS Q       +         G V  
Sbjct: 186 GNVHNTKITRVGAYNLLADGQYVVYNADLGLVQQLSQQPGSEQVASVKDFEGQTSG-VHK 244

Query: 239 MKVDPSRGVLLEQLALTPTLSQRLQAGGVIGNVILVLLGVGLIIALYRGAILATLRQKIK 298
           + VDP+RGVLL       T+ +R++AGG IG +I+ LL +G +I++ R   L  +  K+ 
Sbjct: 245 LFVDPARGVLLNVFTQKATIEERIEAGGTIGYIIIGLLVLGALISIERLVTLYVVGAKVN 304

Query: 299 AQLKNPEQPGNNPLGRILAVYNKEQQRSVEALELRLLEAVVDEQNHLETGLSMLKLLAAL 358
           AQ KN + PGNNPLGR+L  Y+  +   VE LEL+L EA++ E   LET +S++K+LAA+
Sbjct: 305 AQRKNIDNPGNNPLGRVLKAYHDNKDVDVETLELKLDEAILKETPALETRISIIKVLAAI 364

Query: 359 APMLGLLGTVTGMIETFQVITQFGNGDPKVMAGGISMALVTTVEGLIAAIPLLLAHNILS 418
           APM+GLLGTVTGMI TFQ I  FG GDPK+MAGGISMAL+TTV+GL+AA+PL+L H I+ 
Sbjct: 365 APMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGISMALMTTVQGLVAALPLMLMHAIVI 424

Query: 419 AQAEAIRNILEKQGIGLVAQQAER 442
           A+++++  +LE+Q  G+VA+ AE+
Sbjct: 425 ARSKSVVQVLEEQSAGIVAEHAEK 448