Pairwise Alignments

Query, 457 a.a., flagellar motor protein MotA from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., MotA/TolQ/ExbB proton channel family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.5 bits (153), Expect = 6e-15
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 30/192 (15%)

Query: 262 LQAGGVIGNVILVLLGVGLI---IALYRGAILATLRQKI--------------KAQLKNP 304
           LQA  ++  V+  LLG+ ++   + L R ++L   + K               +   +  
Sbjct: 12  LQASLLVKFVMFTLLGLSIMSWTVILQRRSLLTGAKNKSAKFEDKFWSGVDLNRLYKELS 71

Query: 305 EQPGNNPLGRILAVYNKEQQRSVEALELRLLEAVVD------------EQNHLETGLSML 352
            +P N  L  +     KE  R +  L  ++ +AV+D            E   LE  L +L
Sbjct: 72  ARPDNTGLESLFVTGFKEYSR-LNKLNSKVPDAVMDGTSRAMRVTLSRELEKLEANLPLL 130

Query: 353 KLLAALAPMLGLLGTVTGMIETFQVITQFGNGDPKVMAGGISMALVTTVEGLIAAIPLLL 412
             + + +P +GL GTV G++ +F  I    N    ++A GI+ AL+ T  GL AAIP ++
Sbjct: 131 ATIGSTSPYIGLFGTVWGIMNSFIAIGSMENATLAMVAPGIAEALIATAMGLFAAIPAVI 190

Query: 413 AHNILSAQAEAI 424
           A+N  + Q E +
Sbjct: 191 AYNRFATQVEKL 202