Pairwise Alignments

Query, 457 a.a., flagellar motor protein MotA from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., MotA/TolQ/ExbB proton channel family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  285 bits (729), Expect = 2e-81
 Identities = 181/444 (40%), Positives = 253/444 (56%), Gaps = 14/444 (3%)

Query: 8   LALALSLPFAFASVANASNS---LVQQATQEKAQQQQHNLQREAGFV----QTAQELQAA 60
           LA + SL     S A+A  +   L+QQ   ++A + + N +RE  F       A  L+  
Sbjct: 10  LAASFSLTAGMVSAADAPKTIDQLLQQVKVDRAAEGKVNSKREQEFQAERGDKAALLKRE 69

Query: 61  KAELLAERNRLQKEADQLSSQFSDNENTLARLEETLRLETGSLGEMFGVVRQNAKELQSE 120
           K  L AE+ R       L+  F DNE  +A+LEE L+   G LGEMFGVV+  A +   +
Sbjct: 70  KDALAAEKQR----GKDLNQAFLDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAGDFAGK 125

Query: 121 LDQSVTGVEPRAHQQSIDDVVAAKTLPSMAQLRGLWQAMSEEIRASGQVQTTEIQWLNGQ 180
           L  S    +     + I D+ A K LP + +L   WQ    E+  SG+V   +       
Sbjct: 126 LASSNVSAQYPNRDKFIADLGARKQLPKIEELEKFWQEQLFEMAESGKVVKFQGSVTAID 185

Query: 181 GETQTVPALRLGSLGLISEQGYVKWDNARQ--QALSYQQLPSDFPTFSHIRTLVDGDVVT 238
           G  +T    R+G+  L +E  YV ++      Q LS Q       +      +  G    
Sbjct: 186 GSVKTTTIHRVGAYNLTAEGKYVVFNPELNLVQELSIQPEGYQVSSVKKWEQITSG-TAP 244

Query: 239 MKVDPSRGVLLEQLALTPTLSQRLQAGGVIGNVILVLLGVGLIIALYRGAILATLRQKIK 298
             +DP+RGVLL       +   RL++GG IG +ILVLL +GL+IA  R  +LA +  K+K
Sbjct: 245 FYIDPARGVLLNIYTNKASFEDRLESGGTIGYIILVLLALGLLIAAERFIVLAVIGAKVK 304

Query: 299 AQLKNPEQPGNNPLGRILAVYNKEQQRSVEALELRLLEAVVDEQNHLETGLSMLKLLAAL 358
            Q KN ++PGNN LGRIL VY++ +   VE LEL+L EA++ E   LE  + +LK++AA+
Sbjct: 305 NQAKNVDKPGNNALGRILKVYHENKDVDVETLELKLDEAILKETPALEARIPILKVIAAI 364

Query: 359 APMLGLLGTVTGMIETFQVITQFGNGDPKVMAGGISMALVTTVEGLIAAIPLLLAHNILS 418
            PMLGLLGTVTGMI TFQ I  FG GDPK+MAGGISMALVTTV+GL+AA+PL+L H +L 
Sbjct: 365 GPMLGLLGTVTGMIATFQSIQLFGTGDPKLMAGGISMALVTTVQGLVAALPLMLLHAMLV 424

Query: 419 AQAEAIRNILEKQGIGLVAQQAER 442
           A++++I  ILE+Q  G++A  AE+
Sbjct: 425 ARSKSITQILEEQSAGIIAAHAEK 448