Pairwise Alignments

Query, 457 a.a., flagellar motor protein MotA from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Shewanella sp. ANA-3

 Score =  278 bits (710), Expect = 3e-79
 Identities = 170/443 (38%), Positives = 251/443 (56%), Gaps = 12/443 (2%)

Query: 8   LALALSLPFAFASVANASNS---LVQQATQEKAQQQQHNLQREAGFV----QTAQELQAA 60
           LA + SL    AS A+A  +   L+QQ   ++A + + N +RE  F       A  L+  
Sbjct: 10  LAASFSLTAGMASAADAPKTIDQLLQQVKVDRAAEGKVNSKREQEFQAERGDKAALLKRE 69

Query: 61  KAELLAERNRLQKEADQLSSQFSDNENTLARLEETLRLETGSLGEMFGVVRQNAKELQSE 120
           K  L AE+ R       L+  F DNE  +A+LEE L+   G LGEMFGVV+  A +   +
Sbjct: 70  KDALAAEKQR----GKDLNQAFLDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAGDFAGK 125

Query: 121 LDQSVTGVEPRAHQQSIDDVVAAKTLPSMAQLRGLWQAMSEEIRASGQVQTTEIQWLNGQ 180
           L  S    +     + I D+ A K LP + +L   WQ    E+  SG+V   E       
Sbjct: 126 LASSNVSAQYPNRDKFIADLGARKQLPKIEELEQFWQEQLFEMAQSGKVVKFEGSVTGID 185

Query: 181 GETQTVPALRLGSLGLISEQGYVKWDNARQQALSYQQLPSDFPTFSHIR-TLVDGDVVTM 239
           G  +     R+G+  L ++  YV ++          Q P  +   +  +           
Sbjct: 186 GSVKNTTIHRIGTYNLTADGKYVVYNPELGLIQELSQQPEGYQVSAVGKWEQTTSGTAPF 245

Query: 240 KVDPSRGVLLEQLALTPTLSQRLQAGGVIGNVILVLLGVGLIIALYRGAILATLRQKIKA 299
            +DP+RGVLL       +   RL+AGG IG +I+ LL +GL+I++ R   +  +  ++ +
Sbjct: 246 YIDPARGVLLNIFTNKASFEDRLEAGGTIGYIIIALLALGLLISIERLVTMTIIGARVNS 305

Query: 300 QLKNPEQPGNNPLGRILAVYNKEQQRSVEALELRLLEAVVDEQNHLETGLSMLKLLAALA 359
           Q KN ++PGNN LGRIL VY + +   VE LEL+L EA++ E   LE+ +S++K+LAA+A
Sbjct: 306 QRKNIDKPGNNALGRILKVYQENKDVDVETLELKLDEAILKETPALESRISIIKVLAAIA 365

Query: 360 PMLGLLGTVTGMIETFQVITQFGNGDPKVMAGGISMALVTTVEGLIAAIPLLLAHNILSA 419
           PM+GLLGTVTGMI TFQ I  FG GDPK+MAGGISMAL+TTV+GL+AA+PL+L H ++ A
Sbjct: 366 PMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGISMALITTVQGLVAALPLMLMHAVVVA 425

Query: 420 QAEAIRNILEKQGIGLVAQQAER 442
           ++++I  +LE+Q  G++A  AE+
Sbjct: 426 RSKSIVQVLEEQSAGIIAAHAEK 448