Pairwise Alignments

Query, 392 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  120 bits (300), Expect = 9e-32
 Identities = 100/381 (26%), Positives = 181/381 (47%), Gaps = 14/381 (3%)

Query: 13  CLSVTTYAAELTPYTASKVVKANQLAQENKVKEAIQILKQAELSRSYDRAYVARMLGVFY 72
           C   T  +  +   +A KV K+ +     ++ EAI IL +A     +D+AYV RMLG FY
Sbjct: 31  CAVDTRQSKAVGESSAKKVQKSFEAYSNGQLDEAIAILLEANPKNDFDKAYVGRMLGNFY 90

Query: 73  WQNEQIPAAIASLKLAVESNELQDDQAWTTRKMLADLLISQQEYRSALKHYYTLAQAIPA 132
            +  ++  AI  LK AVE++ L       T ++ ADLL+ +++++ A+ +YY   +    
Sbjct: 91  AEKGKMDTAIKYLKQAVEADILGGTDHAATLRLYADLLLQEKQFKEAIPYYYKWMEF--T 148

Query: 133 DQKGNELWLRISQLHFQMQEWKAVLNGMQQYAQFQTKDAVLPLSLQLGAQLNLEQWKPGI 192
            +  ++++ RI   + ++++W  V+    +              ++L +  N +++K  +
Sbjct: 149 CKTDSQMYRRIGIAYSELKQWDKVIEVADKGLSLAESPDKGLYQMKLTSYFNQKKYKNAV 208

Query: 193 LTLKRLLVLEPQKTEWWRQLVSLELRVGQKKEALSTLALAKMQKVALNQQDLRLLAQLYA 252
             L+ ++ L P     W QL    L +     AL+T  LA          ++  LAQL A
Sbjct: 209 GVLETMVPLFPDDGRLWVQLAQFYLMIEDYDNALATYDLAYRNGFLDTGANITRLAQLMA 268

Query: 253 QNGIPERAAQVMESLDEAQSNQQLITERAI---YWQRAKEWDKAIATWRLAA--TKDAKY 307
           Q G P +AA+V E   ++    Q +    I   ++Q AKE+ +A   +  AA  + D K 
Sbjct: 269 QKGAPYQAAKVFEKHMKSGLITQDVKSYEILAGFYQNAKEFKEAAELYGKAAAISNDGKL 328

Query: 308 HWHVAQLLLQEGHYQQALAELDQV----KERDKQAQVALAKTRALYKLNQFEAALVQA-K 362
           +    +LL  E  Y +A+  L++      E   +A   LA   A   L Q+++A  +A  
Sbjct: 329 YLKQGRLLSLEEKYSEAIPVLEKAISLGIEHPGEANFELA--LAHLSLKQYKSAYNRAVL 386

Query: 363 RADSLQSSESAKQWIKYLSQQ 383
            A   ++ +SA  +I Y+ ++
Sbjct: 387 AAKDKKTEKSANSYISYIKEK 407