Pairwise Alignments

Query, 327 a.a., DUF3080 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 93/341 (27%), Positives = 147/341 (43%), Gaps = 33/341 (9%)

Query: 3   LSVVLAALLLLTGCEPRLAIDADFDRYLSRIANVQQRDALSPPAMAAQSLPEKRELLIAI 62
           L  +L  LL L GC+    +D  +  Y  R+A+V  +   SPP      L +      A 
Sbjct: 2   LCFLLCLLLWLPGCQRAKDVDYLWQDYSQRLAHVIDQP-YSPPEFKPMQLGKADRQEQA- 59

Query: 63  DPVTISLLDSYELRQCGLFELIAERNSILGKVQDEFREWDYQVALLNGIQGCLTSPQLSQ 122
             +TIS+LD+  L  C L  LIA+ NS LGKV    ++  YQ++ +     C+ +    +
Sbjct: 60  -SITISILDTLSLGHCPLGRLIADHNSTLGKVAPPSQQLIYQISFIQLAPACIDTLDEGE 118

Query: 123 SLKAQLLDIQNIKQQELASRWHNLLYTSDTMRTQLS----GSQWYDEQWS-HSELLLALE 177
            LK +L      KQ   A  + N + T D   T+       S   DE  +   EL  A+ 
Sbjct: 119 -LKTKLTQALQQKQAH-AMAYFNRVLTGDISITKSLFIGYDSLVLDEMRAGRFELESAIG 176

Query: 178 QLNTIQHQLLSER--PIASKPLVTQQEVLEKQRLLGHFKFSLDRASVWLKVVTQQLENND 235
           QL +I+  +   +   I +  +     ++  Q LL  +  SL  +   L  +   L+ + 
Sbjct: 177 QLLSIKGHIKQRQWQQIDTAQIEPALALMAHQTLLQRYLRSLAYSQAQLIALNDYLQRHS 236

Query: 236 DAIVCGPHRDNTKLNYLRNVFQSQYVEKIQPYLASLDRTYYQLSAQ-LGLF--------- 285
            ++ C  +  N K   L+NVF   Y+ + Q YL+ L++ +Y+LS   L LF         
Sbjct: 237 ASVACRLNHANRKQEILQNVFHKYYLAQTQAYLSQLNQLHYRLSEPLLALFAGSSHQAFI 296

Query: 286 -----EQPHSPFPIQASHQTFRLATQQHAQYWQRLFARCRI 321
                EQP    P Q   Q      ++H ++WQ     C I
Sbjct: 297 EHYFGEQP-GTLPEQLKSQ-----MRRHVKWWQAFRESCNI 331