Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

 Score =  376 bits (966), Expect = e-109
 Identities = 200/430 (46%), Positives = 271/430 (63%), Gaps = 1/430 (0%)

Query: 11  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVP 70
           L+ LA P+++A +A T MGFVD +MAG V   D+AAV++  SIW+P  L   G L+A  P
Sbjct: 1   LLALALPIMVAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMTGTLLATTP 60

Query: 71  VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYM 130
            VAQ  GAG   +I   V Q L LAL+V +     LF  + I+  M+V+  +    + Y+
Sbjct: 61  KVAQRFGAGTFAEIGPLVRQALWLALVVGLIASLALFSAEPILHIMNVDPELIGPCMEYL 120

Query: 131 HAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGV 190
             +   +PA  L+  LR F+DG+  T+PAMV+G  GL LNIPLN+IF+YG  G P +GGV
Sbjct: 121 RGIGTGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHLGVPAMGGV 180

Query: 191 GCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFF 250
           GCG ATAIV W+M L +  +   +      ++F  F  PQ   + RL  +G P+  A+F 
Sbjct: 181 GCGWATAIVMWVMALGMAGWARWAPAYQSSRLFSRFDWPQWAVIKRLLGIGLPIGIAVFA 240

Query: 251 EVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGA 310
           E ++FAV+ALL+  LG+TVVA HQ+ALNFSSLVFM P S+G AV++RVG  LG    + A
Sbjct: 241 ESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQALGRAQPREA 300

Query: 311 AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ 370
             AA VG+ T LA AC++A L    R  IA +YT + VV+ +A  L+++AA++Q  DA+Q
Sbjct: 301 RFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADPVVIEVASMLIVYAALFQFSDAIQ 360

Query: 371 VVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLS 430
           V AAG+LRGY+D       T  +YW +GLP GY LG+T+WL     G  G W G I+GLS
Sbjct: 361 VTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDWLGAAS-GPSGLWQGLIVGLS 419

Query: 431 AAALMLGQRL 440
            AALML  RL
Sbjct: 420 CAALMLSIRL 429