Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., MATE family efflux transporter from Pseudomonas fluorescens FW300-N2E3

 Score =  374 bits (959), Expect = e-108
 Identities = 198/438 (45%), Positives = 273/438 (62%), Gaps = 1/438 (0%)

Query: 3   RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV 62
           R + E  NL+ LA P++IA +A T MGFVD +MAG VS  D+AAV++  SIW+P  L   
Sbjct: 18  RVRLELKNLLGLALPIMIAQLATTAMGFVDAVMAGRVSPRDLAAVALGNSIWIPIYLLMT 77

Query: 63  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 122
           G+L+A  P +AQ  GA +  +I     Q L LAL V +    +L   + I+ +M V+  +
Sbjct: 78  GVLLATTPKIAQRFGAKQHDEIAPLARQALWLALCVGLTGSGLLLSAEPILHWMKVDPQL 137

Query: 123 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 182
              ++GY+H + F  P    +  LR ++D M  T+P+MVIG  GLLLNIP+N+  +YG F
Sbjct: 138 IEPSMGYLHGIAFGFPGIAFYYVLRCYSDAMGRTRPSMVIGVGGLLLNIPVNYALIYGHF 197

Query: 183 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 242
           G P LGGVGCG A+ IV W M L +  +   +   A  +V   F +PQ   + RL  +G 
Sbjct: 198 GLPALGGVGCGWASGIVMWFMALSMAGWTRWAPFYAPTRVLVRFDRPQWAVIKRLVGIGL 257

Query: 243 PVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 302
           P+  A+F E ++FAV+ALL+  LGSTVVA HQ+ALN SSL+FM P S+G AV++RVG  L
Sbjct: 258 PIGIAVFAESSIFAVIALLIGSLGSTVVAGHQIALNISSLLFMIPYSLGMAVTVRVGQAL 317

Query: 303 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 362
           G  +   A+ AA VGL   L  A  +A L +L RE IA +YT ++ V+ +A  L+++AA+
Sbjct: 318 GAGNPYQASFAAKVGLGAALVFAAFSASLILLLREPIASIYTADKTVIQIASMLIVYAAL 377

Query: 363 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 422
           YQ  DA+QV+ AG+LRGY+D  A    T  +YW +GLP GY+LG+T+W      G  G W
Sbjct: 378 YQFSDAIQVICAGALRGYQDTRATMILTLFAYWGIGLPVGYVLGLTDWFGPAS-GPSGLW 436

Query: 423 LGFIIGLSAAALMLGQRL 440
            G I GLS AALML  RL
Sbjct: 437 EGLIAGLSCAALMLSIRL 454