Pairwise Alignments
Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056
Subject, 466 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N1B4
Score = 396 bits (1017), Expect = e-115 Identities = 206/438 (47%), Positives = 281/438 (64%), Gaps = 1/438 (0%) Query: 3 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV 62 R + E NL+ LA P++IA +A T MGFVD +MAG V D+AAV++ SIW+P L Sbjct: 15 RVRLELKNLLGLALPIMIAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMT 74 Query: 63 GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 122 G L+A P VAQ GAG +I V Q L LAL+V + +LF + I+ M V+ + Sbjct: 75 GTLLATTPKVAQRFGAGTHSEIGPIVRQALWLALVVGLMATGMLFSAEPILHIMKVDPEL 134 Query: 123 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 182 + Y+H + +PA L+ LR F+DG+ T+PAMV+G GL LNIPLN+IF+YG F Sbjct: 135 IGPCMQYLHGIASGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHF 194 Query: 183 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 242 G P +GGVGCG ATAIV W+M L + + + ++F F PQ + RL +G Sbjct: 195 GVPAMGGVGCGWATAIVMWVMALGMAGWERWAPAYQSSELFSRFDWPQWSVIKRLLSIGL 254 Query: 243 PVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 302 P+ A+F E ++FAV+ALL+ LG+TVVA HQ+ALNFSSLVFM P S+G AV++RVG L Sbjct: 255 PIGIAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQAL 314 Query: 303 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 362 G ++ + A AA VG+ T LA AC++A L +L RE IA +YT + V+ +A L++++A+ Sbjct: 315 GREEPREARFAAGVGMGTALAYACLSASLMLLLREPIAAIYTADPTVIQVAAMLIVYSAL 374 Query: 363 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 422 +Q DA+QV AAG+LRGY+D T +YW +GLP GY LG+T+W P G G W Sbjct: 375 FQFSDAIQVTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDWF-GAPSGPSGLW 433 Query: 423 LGFIIGLSAAALMLGQRL 440 G I+GLS AALML RL Sbjct: 434 QGLIVGLSCAALMLSIRL 451