Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N1B4

 Score =  396 bits (1017), Expect = e-115
 Identities = 206/438 (47%), Positives = 281/438 (64%), Gaps = 1/438 (0%)

Query: 3   RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV 62
           R + E  NL+ LA P++IA +A T MGFVD +MAG V   D+AAV++  SIW+P  L   
Sbjct: 15  RVRLELKNLLGLALPIMIAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMT 74

Query: 63  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 122
           G L+A  P VAQ  GAG   +I   V Q L LAL+V +    +LF  + I+  M V+  +
Sbjct: 75  GTLLATTPKVAQRFGAGTHSEIGPIVRQALWLALVVGLMATGMLFSAEPILHIMKVDPEL 134

Query: 123 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 182
               + Y+H +   +PA  L+  LR F+DG+  T+PAMV+G  GL LNIPLN+IF+YG F
Sbjct: 135 IGPCMQYLHGIASGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHF 194

Query: 183 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 242
           G P +GGVGCG ATAIV W+M L +  +   +      ++F  F  PQ   + RL  +G 
Sbjct: 195 GVPAMGGVGCGWATAIVMWVMALGMAGWERWAPAYQSSELFSRFDWPQWSVIKRLLSIGL 254

Query: 243 PVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 302
           P+  A+F E ++FAV+ALL+  LG+TVVA HQ+ALNFSSLVFM P S+G AV++RVG  L
Sbjct: 255 PIGIAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQAL 314

Query: 303 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 362
           G ++ + A  AA VG+ T LA AC++A L +L RE IA +YT +  V+ +A  L++++A+
Sbjct: 315 GREEPREARFAAGVGMGTALAYACLSASLMLLLREPIAAIYTADPTVIQVAAMLIVYSAL 374

Query: 363 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 422
           +Q  DA+QV AAG+LRGY+D       T  +YW +GLP GY LG+T+W    P G  G W
Sbjct: 375 FQFSDAIQVTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDWF-GAPSGPSGLW 433

Query: 423 LGFIIGLSAAALMLGQRL 440
            G I+GLS AALML  RL
Sbjct: 434 QGLIVGLSCAALMLSIRL 451