Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog from Xanthomonas campestris pv. campestris strain 8004

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 104/447 (23%), Positives = 176/447 (39%), Gaps = 34/447 (7%)

Query: 10  NLIKLATPVLIASVAQTGMGFVDTIMAG---GVSAIDMAAVSIAASIWLPSILFGVGLLM 66
           NL+  A P+L  ++AQ+  G ++ I  G   G +A+  AA + +   +L   +FG+G  M
Sbjct: 15  NLLLFALPILAGNIAQSLNGSINAIWIGRYLGEAALTAAANANSIMFFLIGSVFGIG--M 72

Query: 67  ALVPVVAQLNGA-----GRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 121
           A   ++ Q  GA      R+         G + AL+     +A  +    ++  M    A
Sbjct: 73  AATILIGQAMGARDIAQARKVMGTSATFFGGLSALIA----VAGWWLAPHLLAAMGTPPA 128

Query: 122 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 181
                  Y+  +  A+P   LF  L +   G    +       + ++L+I  N + ++G 
Sbjct: 129 SLALAEDYLRVIFVAMPTIYLFAFLSAALRGTGDARTPFRFLLLSVVLDIVFNPLLIFGV 188

Query: 182 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE-TFHKPQPKELIRLFRL 240
              P+LG  G   AT +   + L  LL Y+ +   +  +   +    +  P  L  L   
Sbjct: 189 GPFPQLGIAGAAWATVLAQSVALAGLLLYLRSRGHVLWLGRRDLALFRIDPAILRALVGK 248

Query: 241 GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 300
           G P+   +         +  LV   G+   AA+  AL   + V M  M++GAA S     
Sbjct: 249 GVPMGLQMVLISLAMIAMLTLVNGFGTDTAAAYGAALQLWNYVQMPAMALGAACSTMAAQ 308

Query: 301 KLGE------QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 354
            +G         T    +AAN  LMTGL    + A L +  R  +AL    +   + +A 
Sbjct: 309 NVGAGLWARVDATARTGVAANF-LMTGL----LIAPLILFDRWTLALFLPSDSPALEIAR 363

Query: 355 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 414
            L   +     +  V  V +G +R    +         + W + +P   +L         
Sbjct: 364 HLNHISIWSFLLFGVTFVVSGVVRATGAVIPPLLILAFALWGVRVPLANLL-------LP 416

Query: 415 PLGAKGFWLGFIIGLSAAALMLGQRLY 441
            LGA   W  F I  SA +++L    Y
Sbjct: 417 HLGADAVWWSFPIS-SACSMLLSLAYY 442