Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., MATE efflux family protein from Synechococcus elongatus PCC 7942

 Score =  202 bits (515), Expect = 1e-56
 Identities = 126/441 (28%), Positives = 225/441 (51%), Gaps = 12/441 (2%)

Query: 5   KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGL 64
           + E    ++LA P+  A VAQ  +GFVDT+M G +    +AA  +A++++   +    G+
Sbjct: 5   RAELQQFLQLAIPLAAAQVAQAAVGFVDTVMMGRLGPEPLAAGGLASALFQFILATASGV 64

Query: 65  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 124
           +MA+ P+VA+  GAG+ +KI     QGL L++L+ +P++ ++ Q   ++  +        
Sbjct: 65  VMAVSPLVAEAQGAGKDYKIAAIARQGLWLSVLLGLPVMLIISQLARLMPVLGQSATTIA 124

Query: 125 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 184
               Y  AV++ +   L F  LR +   +   +  + +   G L+N   N++  YG+ G 
Sbjct: 125 LARDYWMAVLWGIIPGLGFAMLRGYVAALEQARIILPLVLFGTLVNGLGNYLLGYGQLGF 184

Query: 185 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 244
           P L   G G+++A+  W+M L LL Y     +L     ++ + + QP    ++ +LG+ +
Sbjct: 185 PRLELTGLGLSSALGLWVMFLGLLAYTAWQPKLRRYPFWQDWRRLQPSICRQILQLGWAI 244

Query: 245 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 304
           A  +  E  LF ++ +L+  +G   +AAHQ       L+FM P+    AV++RVG  LG 
Sbjct: 245 AVTVAVEFGLFTIITILMGAIGVEALAAHQTVSQTIILIFMVPLGCSFAVTVRVGWWLGR 304

Query: 305 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE-----NQVVVALAMQLLLF 359
           QD  GA  A  VG+        + A+   LF   I  +Y +     N  ++ LA+ +L  
Sbjct: 305 QDGLGARRAGLVGVGAIALWMLLLAIPLALFPRAIVGIYVDLNNPVNAGLLNLALPMLRV 364

Query: 360 AAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG-MTNWLTEQPLGA 418
           A++   +D VQ VA G+L G +D       + +++W++G+ +  +LG    W      G+
Sbjct: 365 ASLALVLDGVQRVAMGALHGLQDTRIPLLLSLLAFWMVGVGSSAMLGFQLGW------GS 418

Query: 419 KGFWLGFIIGLSAAALMLGQR 439
            G W+G  +G++ A  +  QR
Sbjct: 419 TGLWIGQSLGVAIAGGLFLQR 439