Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., Multi antimicrobial extrusion protein MatE (NCBI) from Rhodospirillum rubrum S1H

 Score =  195 bits (495), Expect = 3e-54
 Identities = 125/437 (28%), Positives = 206/437 (47%), Gaps = 13/437 (2%)

Query: 11  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVP 70
           L+ L+ P++I+  AQ   G VD IMAG +  + +  V+  A++W+P ++F +GLL  + P
Sbjct: 21  LLLLSAPIIISQCAQMASGVVDVIMAGNLDVLTLGTVATGAALWVPMMIFLLGLLYGVTP 80

Query: 71  VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLF-QTQFIIRFMDVEEAMATKTVGY 129
            + ++ G      +     +GL++ LL    + A+LF  +  + R   V   +  +   Y
Sbjct: 81  TIGKMLGENASEAVSGVAARGLLVGLLGGALLGALLFWMSTPLFRLFGVAPELIPEASAY 140

Query: 130 MHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGG 189
           ++ +  A+P   LF A R   +   +     V+  +G+   I LN   V+G  G P LG 
Sbjct: 141 LNWMALAMPGMGLFLAFRFVIEAHHVGWIVTVVAVLGVAAKIWLNDALVHGHAGLPALGT 200

Query: 190 VGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETF-HKPQPKELI-----RLFRLGFP 243
            G G A+  +YW M ++L           H  V   + H+    +L      R  R G P
Sbjct: 201 GGFGAASVALYWGMAVML-----AGATFLHGAVKPLWTHRLSGADLSLAAIGRFLRFGLP 255

Query: 244 VAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 303
           +A     +  + AVVA+ +A LG+  + AHQ+  N   ++ M P  +  A +I +    G
Sbjct: 256 IALNFLSDYLIMAVVAVFIATLGAVAIGAHQITFNILMVLLMMPTGLSMAATILISRSPG 315

Query: 304 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 363
              T       +  L  G+A + + A+L   F   +  LYT++  V+ALA+ LL      
Sbjct: 316 GGHTATLGPVMSWTLGIGVAFSIVLAVLLAAFDAPVIRLYTDDAEVIALALDLLGVVVFI 375

Query: 364 QCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWL 423
             +D V +     LRG  D  + F     ++W++ LP GY+L  T+W+   P G  G+W 
Sbjct: 376 LTIDVVAIALGFFLRGLGDPGSPFLILLAAHWLISLPVGYVLCFTDWVV-APQGPLGWWY 434

Query: 424 GFIIGLSAAALMLGQRL 440
           G   GL  A  +LG RL
Sbjct: 435 GLSTGLLVACCLLGLRL 451